TCONS_00072228-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00072228-protein
Unique Name	TCONS_00072228-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	505

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00072228-protein ID=TCONS_00072228-protein|Name=TCONS_00072228-protein|organism=Clytia hemisphaerica|type=polypeptide|length=505bp
SGKTGKIKRTRISIYPTILFSHDVISPHVRRLRFKRAETLWNSSKTVEKR
LGKMPSASSKPQASQQQVATVDILQEPIKSALSVADKKLRNLEKRRLKLL
ETKKKADKGEELNDDQKIALKNLEAVDFGLEAVKDVRKLISALEGEYAKL
IKKDQKRQKQEQKDALENRSQKYVFDVVDAQAILGEMTEDVRPDFLAGAN
GACLLTETELENLDGIYELINPASSEEKSKKLSERSRTAGQHLVSLVEGK
NSAAVEEVTYKDINNILQKIKTCGYFDKESSESPAAVEETEALSEEQKPV
EAEVVAEPEPETPVAEESPVQEVVETAPVEVEPVNGVDLPPEVQTTPEEE
GIKFMGESEISAAVQEAPLNPVSPEFVPRKMQNPAEDGFEGGETNNSDWQ
QIESGHSNHQGGNYRGRGRGRGRGGGFRGRGGNRDGSGNYRGGNREYRGD
YRGARGGNRGGSGNYRGNREGGRGNFRGGNREGGRGNYRGDRGGHGGNQQ
QQQQQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044840	XLOC_044840	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00072228	TCONS_00072228	Clytia hemisphaerica	transcript

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 133..172
None	No IPR available	COILS	Coil	Coil	coord: 82..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 281..321
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 370..505

Blast

[Close]

BLAST of TCONS_00072228-protein vs. Swiss-Prot (Human)
Match: CAPR1 (Caprin-1 OS=Homo sapiens GN=CAPRIN1 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.217e-26
Identity = 74/203 (36.45%), Postives = 117/203 (57.64%), Query Frame = 0

Query:   76 EPIKSALSVADKKLRNLEKRRLKLLETKKKADKGEELNDDQKIALKNLEAVDFGLEAVKDVRKLISALEGEYAKLIKKDQKRQKQEQKDALENRSQKYVFDVVDAQAILGEMTED-VRPDFLAGANGACLLTETELENLDGIYELINPASSEEKSKKLSERSRTAGQHLVSLVEGKNSAAVEEVTYKDINNILQKIKTCGYFD 277
            E +K  L V DKKLRNLEK++ KL + +++ +KGE LN DQ  A+   + V   LE  K++++   AL  +  K IKK  +R++  +++A     QK +  V++ Q +L ++ +D VR D   G NG  +L+E EL  LD  Y+L++P    + S +L+E+   A  HL  L+EGK    V   TYK +  I++++    YFD
Sbjct:   52 EAMKQILGVIDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEA----EQKRLKTVLELQYVLDKLGDDEVRTDLKQGLNGVPILSEEELSLLDEFYKLVDP--ERDMSLRLNEQYEHASIHLWDLLEGKEK-PVCGTTYKVLKEIVERVFQSNYFD 247

The following BLAST results are available for this feature:

BLAST of TCONS_00072228-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00072228-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CAPR1	2.217e-26	36.45	Caprin-1 OS=Homo sapiens GN=CAPRIN1 PE=1 SV=2	[more]

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TCONS_00072228-protein (polypeptide) - C. hemisphaerica