TCONS_00072219-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072219-protein
Unique NameTCONS_00072219-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length167

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072219-protein ID=TCONS_00072219-protein|Name=TCONS_00072219-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MLIFILEIAGGIYAAVKKDDVLKSLKTNFQRLMTTSYGQTENNKANEGYT
NSIDWFQENVKCCGSTGPNSWKNTTWTNTNRDKAVNGSDYQLFPKSCCKS
GDCNMGNGFPVTSNDNIFMDGCVTESEQFLNDHMKELVGVGVGIAFIQII
GIVFAILLCKKIGVESV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044838XLOC_044838Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072219TCONS_00072219Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008952Tetraspanin_EC2
IPR018499Tetraspanin/Peripherin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008952Tetraspanin, EC2 domainGENE3D1.10.1450.10coord: 16..134
e-value: 1.0E-15
score: 57.4
IPR008952Tetraspanin, EC2 domainSUPERFAMILY48652Tetraspanincoord: 25..134
IPR018499Tetraspanin/PeripherinPFAMPF00335Tetraspannincoord: 2..160
e-value: 1.9E-24
score: 86.6

Blast
[Close]
BLAST of TCONS_00072219-protein vs. Swiss-Prot (Human)
Match: TSN11 (Tetraspanin-11 OS=Homo sapiens GN=TSPAN11 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.141e-20
Identity = 50/163 (30.67%), Postives = 82/163 (50.31%), Query Frame = 0 
Query:    1 MLIFILEIAGGIYAAVKKDDVLKSLKTNFQRLMTTSYGQTENNKANEGYTNSIDWFQENVKCCGSTGPNSWKNTTWTNTNRDKAVNGSDYQLFPKSCCKSGDCNMG-NGFPVTSNDNIFMDGCVTESEQFLNDHMKELVGVGVGIAFIQIIGIVFAILLCKKI 162
            ++IF++E+  G+ A V    +   LK +  R +  +YGQ    +     T S+D  Q++ KCCGS     W+++T+      +       +  P SCCK+     G    P  SN      GC+T+ EQFL DH+  +  VG+G+A +QI G+V    L +++
Sbjct:   98 LVIFLVELVAGVLAHVYYQRLSDELKQHLNRTLAENYGQPGATQI----TASVDRLQQDFKCCGSNSSADWQHSTYILLREAEG------RQVPDSCCKTVVVRCGQRAHP--SNIYKVEGGCLTKLEQFLADHLLLMGAVGIGVACLQICGMVLTCCLHQRL 248
The following BLAST results are available for this feature:
BLAST of TCONS_00072219-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSN112.141e-2030.67Tetraspanin-11 OS=Homo sapiens GN=TSPAN11 PE=2 SV=... [more]
back to top