TCONS_00072211-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00072211-protein
Unique Name	TCONS_00072211-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	833

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00072211-protein ID=TCONS_00072211-protein|Name=TCONS_00072211-protein|organism=Clytia hemisphaerica|type=polypeptide|length=833bp
MLEGYITPLFMGYVDKYIKNLKPEDLSLSLWGGDVVLQNLELNLDVLQKE
LNLPVTFLSGKIHKLQLHVPWTRLIYEPVVVTIKTMEFIIKLNDSGAQAE
PEKTDVETENQTQNKMDQTTTPSEDLPPGYVQSLLNKVVNNICFKVENVI
IKYVEDDIVFSLNAKSVDYFCVDSDWKAAFIDLVQPELLLRRMCTITDLT
ICLDQRTTSGKIDLYQDPVLYKCSLTSRIVMRHRSVNSTKPIEQKFDVSC
ESLDFSLADLQIPMVLRLIKLVIGLFYGTLDLPGCNFKKHSAPIAIEKQK
NASNKSLVALTESKEISANDSWSSWAWSMLPVASDGPSEQSFEENITSFG
LFIKQVNLTLKRTSFLPNMLSGQRIEFSPVMGFELNGCNLNFTSIGDSIV
NVNLGLKMLTGFLFGKNCLCAMDGIKVAEISEDSNLEHELFLKIGVESSQ
DYLKGSLFENKEINVNENPPTSEEAEKENSLTTEESNQPPEDQQQEEEGE
ETNESLSKTKFSADARYLVQQSRSPQENECIFFNYFYEMKLPIPTNEDNE
NIFLFPNTVEKIEEISEKKVVLNSCQSVISTSLIHSLEWLSGILDTKLPQ
RKEKQTIFLDPFVLEQLQSGNFLSRKTSIELQNISIYVLTKDHEKKQKSK
KHLDERESICFELSKCSFVNTEPMYTLELRTLLEKGKILKLMQSSSFDTN
IYVEATGLQSGISVINLDSFDASTIPMLQPFNFQLQCTLSLLQENREVQL
ATMRSQIAINTDEIELLFTKLQMLLYQNVALSWLNGNANSVVDVLTNNIF
NTKPTDSSLMRVKLLHLSANLVDLTSLYCMDVC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044835	XLOC_044835	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00072211	TCONS_00072211	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR026854	VPS13_N
IPR031646	VPS13_N2

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026854	Vacuolar protein sorting-associated protein 13, N-terminal domain	PFAM	PF12624	Chorein_N	coord: 2..116 e-value: 6.4E-26 score: 90.7
IPR031646	Vacuolar protein sorting-associated protein 13, second N-terminal domain	PFAM	PF16908	VPS13	coord: 130..215 e-value: 3.7E-6 score: 26.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 463..507
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..123

Blast

[Close]

BLAST of TCONS_00072211-protein vs. Swiss-Prot (Human)
Match: VP13B (Vacuolar protein sorting-associated protein 13B OS=Homo sapiens GN=VPS13B PE=1 SV=2)

HSP 1 Score: 296.975 bits (759), Expect = 8.362e-85
Identity = 190/510 (37.25%), Postives = 271/510 (53.14%), Query Frame = 0

Query:    1 MLEGYITPLFMGYVDKYIKNLKPEDLSLSLWGGDVVLQNLELNLDVLQKELNLPVTFLSGKIHKLQLHVPWTRLIYEPVVVTIKTMEFIIKLNDSGAQAEPEKTDVETENQTQ----------NKMDQTTTPSEDLPPGYVQSLLNKVVNNICFKVENVIIKYVEDDIVFSLNAKSVDYFCVDSDWKAAFIDLVQPELLLRRMCTITDLTICLDQRTTSGKIDLYQDPVLYKCSLTSRIVMRHRSVNSTKPIEQKFDVSCESLDFSLADLQIPMVLRLIKLVIGLFYGTL----------------DLPGCNFKKHSAPIAIEKQKNASNKSLVALTESKEISANDSWSSWAWSMLP------------VASDGPS------EQSFEENITSFGLFIKQVNLTLKRTSFL--PNMLSGQRIEFSPVMGFELNGCNLNFTSIGDSIVNVNLGLKMLTGFLFGKNCLCAMDGIKVAEISEDSNLEHELFLKIGVESSQD---YLKGSLFENK 461
            MLE Y+TP+ M YV++YIKNLKP DL LSLWGGDVVL  LEL LDVL++EL LP TFLSG IH+L++HVPWT+L  EPVV+TI TME I+KL D G Q + E     + N++            +M Q      DLPPGYVQSL+ +VVNN+   + N+I+KYVEDDIV S+N  S + + V   W  AF+D+   +L+LR++   +D T+CLD+R  SGKI+ YQDP+LYKCS  +R+   + ++NS  P   K     ESL  S+ D Q+PM +R+++L I L+YG +                D+ G N         I+ Q  A +K     ++  E      W SWAWS +P            V +D  S       Q+ ++ I S G +  +  +T K T      +  S Q+++   V+ +E  G  +    +G+   +  +G            CL  + G+K  E + + +     F   G   S     YL  SLF+ +
Sbjct:    1 MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKD-GIQDDHESCGSNSTNRSTAESTKSSIKPRRMQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYENLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRIMQLGIALYYGEIGNFKEGEIEDLTCHNKDMLG-NITGSEDETRIDMQYPAQHKGQELYSQQDE-EQPQGWVSWAWSFVPAIVSYDDGEEDFVGNDPASTMHQQKAQTLKDPIVSIGFYCTKATVTFKLTEMQVESSYYSPQKVKSKEVLCWEQEGTTVEALMMGEPFFDCQIGFVGCRAM-----CLKGIMGVKDFEENMNRSETEACFFICGDNLSTKGFTYLTNSLFDYR 502

The following BLAST results are available for this feature:

BLAST of TCONS_00072211-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00072211-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VP13B	8.362e-85	37.25	Vacuolar protein sorting-associated protein 13B OS...	[more]

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TCONS_00072211-protein (polypeptide) - C. hemisphaerica