TCONS_00072194-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072194-protein
Unique NameTCONS_00072194-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length923

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072194-protein ID=TCONS_00072194-protein|Name=TCONS_00072194-protein|organism=Clytia hemisphaerica|type=polypeptide|length=923bp
MQGDRGKRGRDGIPGRRLGSKGEQGDMGIMGEMGSRGPRGHKGYKGQPGA
PGQNGIPGPVGSRGETGSPGPAGPRGLAGMKGGEGLNGQPGKKGKRGVSG
LPGKQGPQGAAGVPGEVGPQGLKGHEGTIGRMGFVGEDGSPGAPGKRGNT
GPMGVQGDVGYPGLPGFLGSQGQEGDVGERGPHGIKGGKGATGRDGSPGD
TGKKGITGSIGGRGGIGDKGPQGPRGPKGLTGEKGITGFHGYKGIPGSNG
RHGFSGKAGKPGESGTMGSKGKPGVKGDKGSIGESGKEGNQGPQGPRGLP
GTNGNDGQNGHKGIQGENGDIGPIGEMGKRGSIGLPGLPGEKGRKGGRGV
RGSVGANGIKGEQGYPGNPGEPGDPGHPGQVGIKGPTGEQGNEGPRGFEG
LIGELGSKGKPGHVGAKGNPGKSGDNGLSGTKGLKGEPGIKGLSGDMGIK
GPAGATGDAGQQGARGPDGKTGVDGIQGPDGKTGDMGAIGEIGLSGVKGK
KGDAGLPGKPGRNGLTGMQGQQGNRGPKGKDGFTGQKGLRGDQGKRGADG
ERGGMGRRGTPGGNGPQGAMGERGPKGGIGKKGFRGVPGEMGPIGFQGQA
GLLGNEGVQGPPGIYGAMGSRGIPGTNGEKGFPGLAGLPGSRGEPGPRGN
PGLPGLIGVKGYKGDPGDRGPRGRKGEAGIRGEDGQAGEWGDNGDTGKQG
ERGPTGEMGIIGDIGVMGQTGDDGRPGPRGPRGEEGEAGTPGTGAEDGVT
GPMGPPGKDGNDGPFGPIGIHGEKGIAGTDGGPGPNGRQGDSGRRGTSGK
PGTPGMMGMKGAKGSPGVQGDRGAEGDTGPPGQGRGGYGSPGPQGETGDF
GPEGTKGMPGEKGVIGFKGDVGAKGVPGPNGDYGASGMPGPRGFLGRTGV
KGYHGDDGLPGEEGEKGFKGIAV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044824XLOC_044824Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072194TCONS_00072194Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
ZOOM
x 1
POSITION
0
100200300400500600700800900Score = Score = Score = SequenceCoilG3DSA:2.160.20.50mobidb-litemobidb-litemobidb-litemobidb-litePF01391
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 921..923
NoneNo IPR availableGENE3D2.160.20.50coord: 284..355
e-value: 0.0056
score: 16.0
coord: 621..678
e-value: 0.089
score: 12.1
coord: 554..620
e-value: 1.2E-5
score: 24.6
coord: 433..508
e-value: 7.2E-6
score: 25.3
coord: 1..95
e-value: 6.1E-4
score: 19.1
coord: 135..212
e-value: 0.0021
score: 17.4
coord: 356..432
e-value: 0.022
score: 14.1
coord: 679..746
e-value: 1.3E-4
score: 21.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 635..873
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..153
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..585
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 897..923
IPR008160Collagen triple helix repeatPFAMPF01391Collagencoord: 612..664
e-value: 6.9E-8
score: 32.0
coord: 661..709
e-value: 9.3E-8
score: 31.6
coord: 869..919
e-value: 7.0E-8
score: 32.0

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072194-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
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 = 5.16e-59 / Id = 41.35Expect = 1.55e-40 / Id = 41.35Expect = 2.67e-29 / Id = 41.35Expect = 5.34e-68 / Id = 41.35Expect = 2.98e-89 / Id = 41.35Expect = 4.22e-68 / Id = 41.35Expect = 3.54e-50 / Id = 41.35Expect = 9.14e-44 / Id = 41.35SequenceCOOA1
Match NameE-valueIdentityDescription
COOA12.981e-8941.35Collagen alpha-1(XXIV) chain OS=Homo sapiens GN=CO... [more]
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