TCONS_00072031-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072031-protein
Unique NameTCONS_00072031-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072031-protein ID=TCONS_00072031-protein|Name=TCONS_00072031-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp
MSSSSQQFSHLKSPVMRNLSHTPSSASSPYLPGYLFGASSPATPQTNSNH
HKMHGTPSSHHLSGKAPVIGIGENNVFHSPSQFARDHQRPLESDKIMTRK
DKSGAPPTESLYTTKKHSSSSGDETAQQRHQGNDINNFEETLRSHFHPEH
HNDSESMKSPAQIDPFFAEGDSISSGDIMEETAITIFGFPPSACSFIIQQ
FSQYGKIEKYEVHNQGNWMHVKYQTKLQAKKALSKNGKIFARTMMVGVCT
CIKKDIANLEATYNMTTELNRTPVPGMKRQSSTSIRSLSSSSNMSSAKTL
APMSPLVDKNTPQKKDTMISRTLDYVFGL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044728XLOC_044728Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072031TCONS_00072031Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007846RRM_NUP35_dom
IPR017389Nucleoporin_NUP53
IPR000504RRM_dom
Vocabulary: Cellular Component
TermDefinition
GO:0031965nuclear membrane
Vocabulary: Biological Process
TermDefinition
GO:0006913nucleocytoplasmic transport
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006913 nucleocytoplasmic transport
cellular_component GO:0031965 nuclear membrane
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007846RNA-recognition motif (RRM) Nup35-type domainPFAMPF05172Nup35_RRMcoord: 180..258
e-value: 5.5E-21
score: 74.3
IPR007846RNA-recognition motif (RRM) Nup35-type domainPROSITEPS51472RRM_NUP35coord: 178..258
score: 26.848
IPR017389Nucleoporin, NUP53PIRSFPIRSF038119NUP53coord: 1..329
e-value: 2.8E-49
score: 166.7
NoneNo IPR availableGENE3D3.30.70.330coord: 177..250
e-value: 4.2E-5
score: 23.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 275..313
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 180..255

Blast
[Close]
BLAST of TCONS_00072031-protein vs. Swiss-Prot (Human)
Match: NUP53 (Nucleoporin NUP53 OS=Homo sapiens GN=NUP35 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.783e-48
Identity = 106/325 (32.62%), Postives = 168/325 (51.69%), Query Frame = 0 
Query:   30 YLPGYLFG-ASSPATPQTNSNHHKMHGTPSSHHLSGKAPVIGIGENNVFHSPSQFARDHQRPLESDKIMTRKDKSGAPPTESLYTTKKHSSSSGDETAQQRHQGN---------DINNFEETLRSHFHPEHHNDS-ESMKSPAQIDPFFAEGDSISSGDIMEETAITIFGFPPSACSFIIQQFSQYGKIEKYEVHNQGNWMHVKYQTKLQAKKALSKNGKIFARTMMVGVCTCIKKDIANLEATYNMTT-ELNRTPVPGMKRQSSTSIRSLSSSSNMSSAKTLAPMSPLV--------------DKNTPQKKDTMISRTLDYVFG 328
            +LPG+L G   +P TPQ  S             +SG  P +G+ E     SP        +P+    +   KDKSGAPP  S+Y     S   G      R Q N          + +   T +S F P       ++  SPAQ+DPF+ +GDS++S D ++++ +T+FGFP ++ S+I+ QF+QYG I K+ + N GNWMH++YQ+KLQA+KALSK+G+IF  ++M+GV  CI K +        +++  L  TP           I++L + +   S   ++ M PL               D+ TP+K ++++S+ ++Y+FG
Sbjct:   34 FLPGFLMGDLPAPVTPQPRS-------------ISG--PSVGVME---MRSPLLAGGSPPQPV----VPAHKDKSGAPPVRSIYD-DISSPGLGSTPLTSRRQPNISVMQSPLVGVTSTPGTGQSMFSPASIGQPRKTTLSPAQLDPFYTQGDSLTSEDHLDDSWVTVFGFPQASASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCIDKSVMESSDRCALSSPSLAFTP----------PIKTLGTPTQPGSTPRISTMRPLATAYKASTSDYQVISDRQTPKKDESLVSKAMEYMFG 325
The following BLAST results are available for this feature:
BLAST of TCONS_00072031-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NUP531.783e-4832.62Nucleoporin NUP53 OS=Homo sapiens GN=NUP35 PE=1 SV... [more]
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