TCONS_00071956-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071956-protein
Unique NameTCONS_00071956-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length157

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071956-protein ID=TCONS_00071956-protein|Name=TCONS_00071956-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
IDLIDIQSRPSGIYKFIGHVTDCFSKFRVIFPLHSKHAETVVNQLNPQVF
AYFGLPTILHSDNGTEFVNDLIHATIIIWPGICSIVNGGVRHSQSQGLVE
QGNATIERMISSKAAETGNDNWHTWLPQIQCMCFLMRLCMNFHNTSQKRQ
RSFNKSF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044672XLOC_044672Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071956TCONS_00071956Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 14..109
e-value: 2.4E-10
score: 40.5
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..157
score: 14.506
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 1..149
e-value: 3.0E-20
score: 72.1
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 12..130

Blast
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BLAST of TCONS_00071956-protein vs. Swiss-Prot (Human)
Match: KRBA2 (KRAB-A domain-containing protein 2 OS=Homo sapiens GN=KRBA2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.448e-18
Identity = 44/130 (33.85%), Postives = 73/130 (56.15%), Query Frame = 0 
Query:    1 IDLIDIQSRPSGIYKFIGHVTDCFSKFRVIFPLHSKHAETVVNQLNPQVFAYFGLPTILHSDNGTEFVNDLIHATIIIWPGICSIVNGGVRHSQSQGLVEQGNATIERMISSKAAETGNDNWHTWLPQIQ 130
            ++++D+QS   G +KFI +  D  +KF ++ PL +K A  VV+ L   +F   G P++L SD+G EF N ++H    +WP +  IV+G     QSQG +E  +  ++ MIS+      + +W   L  +Q
Sbjct:  265 VEILDMQSSADGEFKFILYYQDHSTKFIILRPLRTKQAHEVVSVL-LDIFTILGTPSVLDSDSGVEFTNQVVHELNELWPDL-KIVSGKYHPGQSQGSLEGASRDVKNMISTWMQSNHSCHWAKGLRFMQ 392
The following BLAST results are available for this feature:
BLAST of TCONS_00071956-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KRBA24.448e-1833.85KRAB-A domain-containing protein 2 OS=Homo sapiens... [more]
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