TCONS_00071884-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071884-protein
Unique NameTCONS_00071884-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length344

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071884-protein ID=TCONS_00071884-protein|Name=TCONS_00071884-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp
MKTVIFFSFFVAVISAECDVSKYKKIGCFQIEDEVRPDSFHEVIDLDETF
DIDNYEEQLPKLVCECFSKTKDDYKYFSIGHNGHCHGGKSFHASNRTNNE
AGCIDVGHHSAGDEEHEYVYQIKADAATPIDGGVSDFGPWSQCSKSCGGG
RKSRERACVDPIPNDPGKGCENLTQVEECNTQNCPINGAWGGWSEFSQCS
KSCGMGSQSRSRKCNSPKEQFGGKKCVGKHTETQSCMPQMCVKGKSDVRI
CEDKAETLSCPANWSVQIQSGSYYGRKNTSVCKRFYNINWSTTCEANGGK
DKMAELCDGKRSCSIDCNNDRFGDPCWGTKKYCLVKYKCVGYDL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044622XLOC_044622Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071884TCONS_00071884Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
IPR000922Lectin_gal-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0030246carbohydrate binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0030246 carbohydrate binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01705TSP1REPEATcoord: 188..201
score: 44.45
coord: 206..217
score: 46.95
coord: 225..236
score: 37.8
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 190..242
e-value: 8.5E-14
score: 61.8
coord: 134..185
e-value: 5.5E-16
score: 69.1
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 186..241
e-value: 2.5E-16
score: 59.2
coord: 130..184
e-value: 6.8E-15
score: 54.6
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 192..241
e-value: 3.6E-13
score: 49.4
coord: 135..184
e-value: 2.4E-9
score: 37.2
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 187..242
score: 13.466
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 131..185
score: 12.802
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 128..184
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 184..241
IPR000922D-galactoside/L-rhamnose binding SUEL lectin domainPFAMPF02140Gal_Lectincoord: 258..339
e-value: 3.6E-15
score: 56.0
IPR000922D-galactoside/L-rhamnose binding SUEL lectin domainPROSITEPS50228SUEL_LECTINcoord: 250..340
score: 12.773

Blast
[Close]
BLAST of TCONS_00071884-protein vs. Swiss-Prot (Human)
Match: TSP1 (Thrombospondin-1 OS=Homo sapiens GN=THBS1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 9.352e-26
Identity = 57/112 (50.89%), Postives = 65/112 (58.04%), Query Frame = 0 
Query:  131 DGGVSDFGPWSQCSKSCGGGRKSRERACVDPIPNDPGKGCE-NLTQVEECNTQNCPINGAWGGWSEFSQCSKSCGMGSQSRSRKCNSPKEQFGGKKCVGKHTETQSCMPQMC 241
            DGG S + PWS CS +CG G  +R R C  P P   GK CE    + + C    CPING WG WS +  CS +CG G Q RSR CN+P  QFGGK CVG  TE Q C  Q C
Sbjct:  435 DGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACPINGGWGPWSPWDICSVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVTENQICNKQDC 546
The following BLAST results are available for this feature:
BLAST of TCONS_00071884-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSP19.352e-2650.89Thrombospondin-1 OS=Homo sapiens GN=THBS1 PE=1 SV=... [more]
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