TCONS_00071556-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00071556-protein
Unique Name	TCONS_00071556-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	457

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00071556-protein ID=TCONS_00071556-protein|Name=TCONS_00071556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=457bp
MNMLFHHLLILLACIVSSFASSSKTCPTKCKCYWKHDWKGNYEVQVHCKD
LNITNKDLPDVASQLDTKRTVELDLSRNLITEFQAELFVNFTKLDRITLN
ENQLTRLPANISLYIPSILIIDLDDININKIKQKDFEGYNSIIAISLRRN
GIENLEPDVFQNLSQLEYLYVGHNKLTTLRKGTFTGLAKLRELFLTGNDI
TTVETGVFGDLPSLSYIYLQFNKITTARRDWFGSVVPDYLELKENPLICD
CVMYDTINYFSEIYHDGRIGGKCNGTELADFYHKNKLNCSSCSVNECQNN
ATCQVVDQFNYNCSCSQNNHGEFCQFKNACSFNLRFKPCQEITNSICVPI
QNIFKCDCRVGYSGERCQMKDICYFDNPCQNDGICKKSNISMGYTCQCNE
GYHGQQCQLSTPDTGFIILMVVLAILVLIGLVGLAIFFRRRRGHKDNGEE
VNISLNK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044457	XLOC_044457	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00071556	TCONS_00071556	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000742	EGF-like_dom
IPR003591	Leu-rich_rpt_typical-subtyp
IPR001611	Leu-rich_rpt
IPR032675	L_dom-like
IPR013032	EGF-like_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000742	EGF-like domain	SMART	SM00181	egf_5	coord: 329..368 e-value: 0.24 score: 20.5 coord: 372..408 e-value: 3.3E-5 score: 33.3 coord: 291..325 e-value: 18.0 score: 13.1
IPR000742	EGF-like domain	PFAM	PF00008	EGF	coord: 376..405 e-value: 1.1E-5 score: 25.5
IPR000742	EGF-like domain	PROSITE	PS50026	EGF_3	coord: 288..325 score: 11.842
IPR000742	EGF-like domain	PROSITE	PS50026	EGF_3	coord: 369..408 score: 17.294
IPR000742	EGF-like domain	PROSITE	PS50026	EGF_3	coord: 326..368 score: 12.415
IPR003591	Leucine-rich repeat, typical subtype	SMART	SM00369	LRR_typ_2	coord: 187..210 e-value: 0.082 score: 22.0 coord: 71..90 e-value: 240.0 score: 1.9 coord: 163..186 e-value: 0.0012 score: 28.1 coord: 91..114 e-value: 17.0 score: 11.4 coord: 211..234 e-value: 6.9 score: 14.6
IPR001611	Leucine-rich repeat	PFAM	PF13855	LRR_8	coord: 145..200 e-value: 4.5E-17 score: 61.5
None	No IPR available	GENE3D	2.10.25.10		coord: 370..410 e-value: 1.6E-7 score: 30.6
None	No IPR available	GENE3D	2.10.25.10		coord: 328..369 e-value: 1.1E-5 score: 25.0
None	No IPR available	GENE3D	2.10.25.10		coord: 272..327 e-value: 2.1E-4 score: 20.8
None	No IPR available	GENE3D	1.20.5.510		coord: 411..442 e-value: 5.6E-5 score: 22.4
None	No IPR available	CDD	cd00054	EGF_CA	coord: 338..368 e-value: 0.00413348 score: 34.1494
None	No IPR available	CDD	cd00054	EGF_CA	coord: 371..408 e-value: 6.04122E-6 score: 42.2386
None	No IPR available	CDD	cd12087	TM_EGFR-like	coord: 410..445 e-value: 0.00588691 score: 33.6578
None	No IPR available	SUPERFAMILY	57196	EGF/Laminin	coord: 285..327
None	No IPR available	SUPERFAMILY	57196	EGF/Laminin	coord: 374..409
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 105..266 e-value: 4.0E-28 score: 97.4 coord: 14..104 e-value: 7.0E-11 score: 40.9
IPR032675	Leucine-rich repeat domain, L domain-like	SUPERFAMILY	52058	L domain-like	coord: 50..259
IPR013032	EGF-like, conserved site	PROSITE	PS01186	EGF_2	coord: 356..367
IPR013032	EGF-like, conserved site	PROSITE	PS00022	EGF_1	coord: 356..367
IPR013032	EGF-like, conserved site	PROSITE	PS00022	EGF_1	coord: 313..324
IPR013032	EGF-like, conserved site	PROSITE	PS01186	EGF_2	coord: 396..407
IPR013032	EGF-like, conserved site	PROSITE	PS00022	EGF_1	coord: 396..407

Blast

[Close]

BLAST of TCONS_00071556-protein vs. Swiss-Prot (Human)
Match: SLIT2 (Slit homolog 2 protein OS=Homo sapiens GN=SLIT2 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 9.472e-23
Identity = 120/451 (26.61%), Postives = 166/451 (36.81%), Query Frame = 0

Query:   27 PTKCKCY--WKHDW-------KGNYEVQVHCKDLNITNKDLPDVASQLDTKRTVELDLSRNLITEFQAELFVNFTKLDRITLNENQ-LTRLPANISLYIPSILIIDLDDININKIKQKDFEGYNSIIAISLRRNGIENLEPDVFQNLSQLEYLYVGHNKLTTLRKGTFTGLAKLRELFLTGNDITTVETGVFGDLPSLSYIYLQFNKITTARRDWFGSVVPDYLELKENPLICDCVMYDTINYFSEIYHDGRIGGKCNGTELAD----------FYHKNKLN------CSSCSVNECQNNATCQVVDQFNYNCSCSQN------------------NHGEFCQFKNA--------CSFNLRFKPCQE----------ITNSICVPIQNIFKCDCRVGYSGERCQMK-DICYFD-NPCQNDGICKKSNISMGYTCQCNEGYHGQQCQLSTPD 413
            P  C CY  W  +W        GN   Q   K   +    + DVA Q  T      D S + ++    E     T LD +    N+ L  LP  I   +  + +    D N   +  K+   Y  +  I L  N I  L    F N++QL  L + +N+L  +   TF GL  LR L L GNDI+ V  G F DL +LS                       +L +  NPL CDC M    ++    Y +  I       E+AD          F  +  ++      C+ C  N C+N+ TC       Y C+C                      HG  C  K          C+     + C+             NS CV   N + C C   Y+GE C+ K D C  D NPCQ+D  C  +    G+ C C  GY G+ C +   D
Sbjct:  665 PFNCNCYLAWLGEWLRKKRIVTGNPRCQ---KPYFLKEIPIQDVAIQDFTCDDGNDDNSCSPLSRCPTEC----TCLDTVVRCSNKGLKVLPKGIPRDVTELYL----DGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS-----------------------HLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKFTCQGPVDVNILAKCNPCLSNPCKNDGTCNSDPVDFYRCTCPYGFKGQDCDVPIHACISNPCKHGGTCHLKEGEEDGFWCICADGFEGENCEVNVDDCEDNDCENNSTCVDGINNYTCLCPPEYTGELCEEKLDFCAQDLNPCQHDSKCILT--PKGFKCDCTPGYVGEHCDIDFDD 1079

HSP 2 Score: 91.2781 bits (225), Expect = 1.888e-19
Identity = 116/425 (27.29%), Postives = 177/425 (41.65%), Query Frame = 0

Query:   26 CPTKCKCYWKHDWKGNYEVQVHCKDLNITNKDLPDVASQLDTKRTVELDLSRNLITEFQAELFVNFTKLDRITLNENQLTRLPANISLYIPSILIIDLDDININKIKQKDFEGYNSIIAISLRRNGIENLEPDVFQNLSQLEYLYVGHNK---------LTTLRKGTF--TGLAKL--------RELFLTGNDITTVETGVFGDL-----PSLSYIYLQFNKITTARRDWFGSVVPDYLELKENPLICDCVMYDTINYFSEIYHDGRIGGKCNGTE---------LADFYHKN--KLNCSSCSVNECQNNATCQVVDQFN-YNCSCSQNNHGEFCQFK-NACSFNLRFKPCQEITNSICVPIQNIFKCDCRVGYSGERCQMK-DICYFDNPCQNDGICKKSNISMGYTCQCNEGYHGQQCQLSTP 412
            CPT+C C        +  V+   K L +  K +P        +   EL L  N  T    EL  N+  L  I L+ N+++ L       +  +L + L    +  I  + F+G  S+  +SL  N I  +    F +LS L +L +G N          L+   K  +   G+A+         + L  T +   T +  V  ++     P LS          +   D++    P   + ++    CD  ++  I+      +  + GG C+  E          AD +     ++N   C  N+C+NN+TC  VD  N Y C C     GE C+ K + C+ +L   PCQ   +S C+     FKCDC  GY GE C +  D C  DN C+N   C  ++   GYTC C EGY G  C+ S P
Sbjct:  727 CPTECTCL-------DTVVRCSNKGLKVLPKGIP--------RDVTELYLDGNQFTLVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKFTCQGPVDVNILAKCNPCLSNPCKNDGTCNSDPVDFYRCTCPYGFKGQD----CDVPIHACIS------NPCKHGGTCHLKEGEEDGFWCICADGFEGENCEVNVDDCEDNDCENNSTC--VDGINNYTCLCPPEYTGELCEEKLDFCAQDL--NPCQH--DSKCILTPKGFKCDCTPGYVGEHCDIDFDDCQ-DNKCKNGAHC--TDAVNGYTCICPEGYSGLFCEFSPP 1116

The following BLAST results are available for this feature:

BLAST of TCONS_00071556-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00071556-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SLIT2	9.472e-23	26.61	Slit homolog 2 protein OS=Homo sapiens GN=SLIT2 PE...	[more]

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TCONS_00071556-protein (polypeptide) - C. hemisphaerica