TCONS_00071473-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071473-protein
Unique NameTCONS_00071473-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length334

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071473-protein ID=TCONS_00071473-protein|Name=TCONS_00071473-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
MSYKWSAELYVSDSKPKTPTTPTTPAFPVTPASTPVTPSTPERNQASEVF
HNLQVERQQFQARLYKKWLNSKLKQAPGQPQIEDLFQDLRDGRNLLLLLR
VLTGRLLKPVKGNMRLHHLNNLTLVLDVLREHKVRLIGINNDSITDGDTT
TTLGLCWNIMYHFQVVETMEHFSGNAEEALLKWCENIVADYSNASVKSFQ
PKKWRKGYTLNAILHAFKPDLFRYSDLTNMSSVERIQHALHHAEESFDVH
ALFTADEFHDGSVDNKALVLYVSSLYAKMKDMELPGVDQSGSEMEGLLSQ
LTECEVELKTLDSKEVPELYIIPENEAVLESKHK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044376XLOC_044376Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071473TCONS_00071473Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001715CH-domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 294..314
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..43
IPR001715Calponin homology domainSMARTSM00033ch_5coord: 61..162
e-value: 2.5E-13
score: 60.3
coord: 176..275
e-value: 4.7E-6
score: 36.1
IPR001715Calponin homology domainGENE3D1.10.418.10coord: 169..284
e-value: 2.1E-18
score: 65.7
IPR001715Calponin homology domainPFAMPF00307CHcoord: 64..164
e-value: 3.5E-17
score: 62.4
coord: 176..279
e-value: 1.6E-13
score: 50.7
IPR001715Calponin homology domainGENE3D1.10.418.10coord: 42..168
e-value: 1.1E-25
score: 89.5
IPR001715Calponin homology domainPROSITEPS50021CHcoord: 174..277
score: 11.561
IPR001715Calponin homology domainPROSITEPS50021CHcoord: 59..164
score: 14.425
IPR001715Calponin homology domainSUPERFAMILY47576Calponin-homology domain, CH-domaincoord: 36..276

Blast
[Close]
BLAST of TCONS_00071473-protein vs. Swiss-Prot (Human)
Match: PLEC (Plectin OS=Homo sapiens GN=PLEC PE=1 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 6.048e-45
Identity = 98/264 (37.12%), Postives = 135/264 (51.14%), Query Frame = 0 
Query:   21 TPTTPAFPVTPASTPVTPSTPERNQASEVFHNLQVERQQFQARLYKKWLNSKLKQAPGQPQIEDLFQDLRDGRNLLLLLRVLTGRLLKPVKGNMRLHHLNNLTLVLDVLREHKVRLIGINNDSITDGDTTTTLGLCWNIMYHFQVVETMEHFSGNAE-----EALLKWCENIVADYSNASVKSFQPKKWRKGYTLNAILHAFKPDLFRYSDLTNMSSVERIQHALHHAEESFDVHALFTADEFHDGSVDNKALVLYVSSLYAKM 279
            +P TP  P T   T   P  PE   A++       ER + Q + + KW+N  L +A  Q  I DL++DLRDG NL+ LL VL+G  L   KG MR H L N+ + LD LR  +V+L+ I ND I DG+   TLGL W I+ HFQ+ +     SG +E     E LL W + +V  Y      +F    WR G   NAI+H  KP L   + +   +++E +  A   AE    V  L   ++      D K+++ YVSSLY  M
Sbjct:  149 SPETPVVPATTQRTLARPG-PEPAPATD-------ERDRVQKKTFTKWVNKHLIKA--QRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDI--QVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNF-TSSWRDGRLFNAIIHRHKPLLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAM 399
The following BLAST results are available for this feature:
BLAST of TCONS_00071473-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLEC6.048e-4537.12Plectin OS=Homo sapiens GN=PLEC PE=1 SV=3[more]
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