TCONS_00071441-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071441-protein
Unique NameTCONS_00071441-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length215

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071441-protein ID=TCONS_00071441-protein|Name=TCONS_00071441-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
MKEMYKKPPIKVDIKVVLLGRYFCGKTSLIQRFIYGTFEDRYSNTIGAAF
SGKTITVNGKSVEVAIWDTVGDEKYESLSRMYYRNAKAAVLCYDLTDSKS
WDRAKFWVNEVRKNEEDCKIYLCGTKLDLIANQERAVDFRDVSKYAQSIG
AKEFETSSKSGENIDEVFQTIVSDYLEHNKDMLEGQNEDITIQLAPTSND
GIRNAFARFQQKCCM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044370XLOC_044370Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071441TCONS_00071441Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 37..53
score: 31.22
coord: 55..77
score: 36.26
coord: 116..129
score: 40.36
coord: 14..35
score: 37.63
coord: 153..175
score: 31.3
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 19..215
e-value: 4.1E-4
score: 9.9
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 16..178
e-value: 3.2E-12
score: 36.7
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 11..178
e-value: 3.9E-11
score: 40.9
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 14..178
e-value: 7.2E-41
score: 151.8
NoneNo IPR availableGENE3D3.30.70.1390coord: 12..77
e-value: 1.2E-21
score: 76.0
NoneNo IPR availableGENE3D3.40.50.300coord: 78..175
e-value: 1.6E-30
score: 104.6
NoneNo IPR availablePROSITEPS51419RABcoord: 4..214
score: 28.549
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 13..171
e-value: 1.5E-23
score: 81.4
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 15..175
e-value: 1.3E-46
score: 158.0
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 11..177

Blast
[Close]
BLAST of TCONS_00071441-protein vs. Swiss-Prot (Human)
Match: RAB24 (Ras-related protein Rab-24 OS=Homo sapiens GN=RAB24 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.303e-61
Identity = 92/169 (54.44%), Postives = 127/169 (75.15%), Query Frame = 0 
Query:   11 KVDIKVVLLGRYFCGKTSLIQRFIYGTF-EDRYSNTIGAAFSGKTITVNGKSVEVAIWDTVGDEKYESLSRMYYRNAKAAVLCYDLTDSKSWDRAKFWVNEVRKNEEDCKIYLCGTK--LDLIANQERAVDFRDVSKYAQSIGAKEFETSSKSGENIDEVFQTIVSDYL 176
            +VD+KVV+LG+ + GKTSL++R+++  F    Y NTIGAAF  K ++V  ++V + IWDT G E+YE++SR+YYR AKAA++CYDLTDS S++RAKFWV E+R  EE C+IYLCGTK  L     + R VDF DV  YA +I A+ FETSSK+G+++DE+FQ +  DY+
Sbjct:    5 RVDVKVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMSVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRSLEEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDELFQKVAEDYV 173
The following BLAST results are available for this feature:
BLAST of TCONS_00071441-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB241.303e-6154.44Ras-related protein Rab-24 OS=Homo sapiens GN=RAB2... [more]
back to top