TCONS_00071237-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071237-protein
Unique NameTCONS_00071237-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1143

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071237-protein ID=TCONS_00071237-protein|Name=TCONS_00071237-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1143bp
MNNQNIMQQYFDPQQQATMNGGFPGTQGFQANQQNISSSINGPTPTSNAY
MSSAAGYQQNGAAKFNNNTTSNESGESFDSNNTAQNPPNSQAQMFPPNYM
DPRMGGFDPRNRPNLDPMSSGMDAFGPNTNFPNKMRMNDNMAAFFNNPAA
MAALQRQRMGMYGQGRENDFMSPNNPYGNFNPQAANFMQQQRFAAFQRQM
QMGGRNMQQFPPTSNAGNQPNPKDNGEGPNSSTPTPQQQKPATPQPNDSS
PAPREKKSKKGRSNTPKTNKLANDNANAFPANNLPTADGNNPQSTQDQNN
AAMIAAEAVRVAAAASSRKPGMAPQPMGGPYGMPGYPMNPVPGMPPHMQQ
APYMGQNQQPPDFGAMSPSKDMLMAMNQGRGTPRNNVPPPPYSPSPFSND
SNHSASGSVKGSSSNLANLPKGTPVKAETNPSTDDQQASTENSSTTDKTI
KIENDDPSNGINLNSQQQQPSPFINHNTVLSSPHTPASNVPNNASPAPSP
FQDDNNYIDNLSPSWPNTPLSPNAQKKLKAKTAPKQFDQLSKVYDVIQDE
EKRNFFDKYLAFMSVNGTPVTKLPVIGNKALDLYSLFRSVCERGGIQQVM
EKRIFKEILTCLNLPVEDATVAYMLKAQYMTYLHAYELKAKESLLKQWGQ
KKTLENSVPSTANSAVPTIALNDSFQPDVKPVLSSGAMTNQNATSTTASS
STQPWMNNSTAAVSTVTSVSTPQNTVTPNQFNPNMPYGSMPNTSMGNFNQ
QGMNAYGNQGQDIPPGYPGYGGFQNPMFQRPPGMQNFGNMRPGMNDQMGA
GWPRGFQPRQGPPELYPEGLQRMPWNQNAQRHPRSAFASPNNFQNQKGKN
KMPPISRDPLEQMKMQQFKLQQQQAQQQQQQQELKQSQPTPKLTKKQQKQ
AAKLQQQQQAQQAAQQKQQQQAQQNQVRQPTPPFNPQTPQQQMNKRFNSP
DAKAAMYRARMQMPQQQQQQPQQDMRFQMTPLHNLKREFAFPPDSVEATK
PVLRKRKKLTSKDLGPVEAWRIMMSLKSGLVSECTWAIDTLNILLADNNT
ITYFHLKQLPGLLDTLMDHYRRSMGNLFDDFSFTEIPISATTDTNDEGLT
INNKLTDLWVGVCKNAQSSYTSNIASNAVVGGMKETLNXKRPK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044281XLOC_044281Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071237TCONS_00071237Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001606ARID_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 896..924
NoneNo IPR availableCOILSCoilCoilcoord: 865..885
NoneNo IPR availableSMARTSM01014ARID_2coord: 546..637
e-value: 4.0E-23
score: 92.8
NoneNo IPR availableGENE3D1.10.150.60coord: 536..889
e-value: 3.2E-31
score: 107.2
IPR001606ARID DNA-binding domainSMARTSM00501bright_3coord: 550..642
e-value: 5.0E-21
score: 85.9
IPR001606ARID DNA-binding domainPFAMPF01388ARIDcoord: 551..637
e-value: 1.8E-17
score: 63.7
IPR001606ARID DNA-binding domainPROSITEPS51011ARIDcoord: 549..641
score: 25.699
IPR001606ARID DNA-binding domainSUPERFAMILY46774ARID-likecoord: 536..641

Blast
[Close]
BLAST of TCONS_00071237-protein vs. Swiss-Prot (Human)
Match: ARI1A (AT-rich interactive domain-containing protein 1A OS=Homo sapiens GN=ARID1A PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 7.195e-33
Identity = 56/102 (54.90%), Postives = 81/102 (79.41%), Query Frame = 0 
Query:  985 LKREFAFPPDSVEATKPVLRKRKKLTSKDLGPVEAWRIMMSLKSGLVSECTWAIDTLNILLADNNTITYFHLKQLPGLLDTLMDHYRRSMGNLFDDFSFTEI 1086
            ++R+  FPP SVEAT+PVL++R++LT KD+G  EAWR+MMSLKSGL++E TWA+DT+NILL D+N+I  F+L QLPGLL+ L++++RR +  +F      E+
Sbjct: 1635 IRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYEV 1736
The following BLAST results are available for this feature:
BLAST of TCONS_00071237-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARI1A7.195e-3354.90AT-rich interactive domain-containing protein 1A O... [more]
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