TCONS_00071017-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00071017-protein
Unique Name	TCONS_00071017-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	776

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00071017-protein ID=TCONS_00071017-protein|Name=TCONS_00071017-protein|organism=Clytia hemisphaerica|type=polypeptide|length=776bp
MAGRRLRQFFTGRRGSQNGDRPSNEEDDATAQGEQQLSQVEQQLGQVGLD
DQSSNDAPGAVGGPPIVPAGASSGNGAVAGGSGGAIGGDGVYTTSKEMYD
NSTDYIVASLAEGMVPNEDQSGFSFQIELIKRLERFLILGTEGNTYYASE
KDRTYENISCINELLEKGEVDKVLHILKTFSVQGRCPKEEPILVALVQCC
YFQNAEIRKKAYDLVSPICNIPTKLFRFIELCQQNVNQERTAKKHLTELP
KELKKNPLKQNPLKRKKEPMESEECIEEAPDSKKAKKQKKKNSPFKSYHT
DKARSSGWGRMRRRGISSFYCDKNKSAERLLYLLTKFKNRNNWNHRQVLG
YAHPKISKDDDEQDGKNLVLAYCTRGVEGFQKKLNEIKRRSANCLPQNVS
RIQNFVQILEQVSKLSPENEGDEEKLLQFLRGYGIRESADEFAVEIALPG
VPLTPPPPSSGKEKAKNSKQPFQVVREHIPTAFLSSAKVWEALLQDMPMT
AMLRNLGKMTSLGLFQKPENLKIVLDALGDTNRLQKARIHPIKLLIGMKA
YENGASLSMMSSVTKTNTTTWEANQEILKILDKAFYKSFKQPETQDAFRT
GKRFMLALDVSGSMTCGGCNGCEQLTPSIAATALSMVTWNIEEHVEMVAF
GGRLERLEDHGLRKDLTINDAWRKMSRINFGSTDCALPMNYAIDRNLDID
VFIVYTDSDTNSYNHPHKALQRYREKMGKPNAKLIVIALTSNGFSIADPN
DRHMLDVVGFDPAVPEMICNFVNDSY

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044130	XLOC_044130	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00071017	TCONS_00071017	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002035	VWF_A
IPR008858	TROVE_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002035	von Willebrand factor, type A	GENE3D	3.40.50.410		coord: 568..776 e-value: 4.1E-19 score: 68.2
IPR002035	von Willebrand factor, type A	SUPERFAMILY	53300	vWA-like	coord: 599..773
IPR008858	TROVE domain	PFAM	PF05731	TROVE	coord: 118..590 e-value: 3.3E-72 score: 243.6
IPR008858	TROVE domain	PROSITE	PS50988	TROVE	coord: 116..597 score: 40.489
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..306
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74
None	No IPR available	SUPERFAMILY	140864	TROVE domain-like	coord: 118..246
None	No IPR available	SUPERFAMILY	140864	TROVE domain-like	coord: 455..590 coord: 303..392

Blast

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BLAST of TCONS_00071017-protein vs. Swiss-Prot (Human)
Match: RO60 (60 kDa SS-A/Ro ribonucleoprotein OS=Homo sapiens GN=TROVE2 PE=1 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 1.104e-73
Identity = 177/484 (36.57%), Postives = 251/484 (51.86%), Query Frame = 0

Query:  295 FKSYHTDKARSSGWGRMRRRGISSFYCDKNKSAERLLYLLTKFKNRNNWNHRQVLGYAHPKISKDDDEQDGKNLVLAYCTRGVEGFQKKLNEIKRRSANCLPQNVSRIQNFVQILEQVSKLSPENEGDEEKLLQFLRGY-GIRESADEFAVEIALPGVPLTPPPPSSGKEKAKNSKQPFQVVREHIPTAFLSSAKVWEALLQDMPMTAMLRNLGKMTSLGLFQKPEN--LKIVLDALGDTNRLQKARIHPIKLLIGMKAYENGASLSMMSSVTKTNTTTWEANQEILKILDKAFYKSFKQPETQDAFRTGKRFMLALDVSGSMTCGGCNGCEQLTPSIAATALSMVTWNIEEHVEMVAFGGRLERLEDHGLRKDLTINDAWRKMSRINFGSTDCALPMNYAIDRNLDIDVFIVYTDSDTNSYN-HPHKALQRYREKMGKPNAKLIVIALTSNGFSIADPNDRHMLDVVGFDPAVPEMICNFVND 774
            FK    +  +   WGR  R+ I+ +Y +K   A  L   +TK+K RN W+H+ +L  +H K S      +G  +V  Y T+G     K+++E+ +  A                      LS E E    KLL++L     ++ + DE  V I L                     +  ++VREH+ T  L S +VW+ALLQ+MP+TA+LRNLGKMT+  + + P N  + +V + L +   L+KARIHP  +LI ++ Y+ G  L             W  ++EILK LD AFYK+FK  E      TGKRF+LA+DVS SM          L  S  A A+ MV    E+   +VAF    + +    +  D+T+      MS+I  G TDC+LPM +A   N   DVFIV+TD++T +   HP  AL+ YR+KM  P AKLIV  +TSNGF+IADP+DR MLD+ GFD    ++I NF  D
Sbjct:  131 FKKDLKESMKCGMWGRALRKAIADWYNEKGGMA--LALAVTKYKQRNGWSHKDLLRLSHLKPS-----SEGLAIVTKYITKG----WKEVHELYKEKA----------------------LSVETE----KLLKYLEAVEKVKRTRDELEV-IHLI--------------------EEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLE-PGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLR--------GKLKWRPDEEILKALDAAFYKTFKTVEP-----TGKRFLLAVDVSASMNQRVLGSI--LNASTVAAAMCMVVTRTEKDSYVVAFS---DEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPAIALREYRKKMDIP-AKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLD 536

HSP 2 Score: 92.0485 bits (227), Expect = 2.470e-19
Identity = 47/122 (38.52%), Postives = 69/122 (56.56%), Query Frame = 0

Query:  110 LAEGMVPNEDQSGFSFQIELIKRLERFLILGTEGNTYYASEKDRTYENISCINELLEKGEVDKVLHILKTFSVQGRCPKEEPILVALVQCCYFQNAEIRKKAYDLVSPICNIPTKLFRFIEL 231
            L E  + N  Q G+ +Q+  + RL RFL  G+EG TYY  E+    EN   +  L+E G   +V+  +K+FS +GR  K+EP+L AL  C    +   ++ A+  VS +C IPT LF FI+ 
Sbjct:   11 LNEKQIAN-SQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEALIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCRIPTHLFTFIQF 131

The following BLAST results are available for this feature:

BLAST of TCONS_00071017-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00071017-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RO60	1.104e-73	36.57	60 kDa SS-A/Ro ribonucleoprotein OS=Homo sapiens G...	[more]

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TCONS_00071017-protein (polypeptide) - C. hemisphaerica