TCONS_00070941-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070941-protein
Unique NameTCONS_00070941-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length420

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070941-protein ID=TCONS_00070941-protein|Name=TCONS_00070941-protein|organism=Clytia hemisphaerica|type=polypeptide|length=420bp
FSVKQNQNIENKQTQHYPVMFVLKPFTTTTWSKYVYCKHQIRRCLSFTDL
SLDVSLVRKLRSFEIRTPTAIQEKCCELMLKGQNLVLNSETGSGKTLAYA
VPIVQRIQERRRLKQQKPHPSAVVLLPSVELCYQVGDVFRSMLGVNVSLV
TSDIPMRLKNTDVVVTTPHALSTYPYNVLNETETIIIDEADILIDKRIGK
HGRKDPLFRLMNHMLDMENKTFDHDRQFVFVGATMPDSEVKKSRKAMTYI
RHWVPDIQMVRGDEAHMMLSRLDMIYMDVDRGNKLKYFVKAVSQLGTENF
KMLVFVDTVKTAQKFFQDLTRIDQHHGSTIEKDTFPEQLLLFQKRWTDSL
LLLHRDVSRDDRLTSLDYFNKSRQCILITTDVSARGLDFQDXINQYNVYL
LRRMSQLEDLISKMWMLSYC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044094XLOC_044094Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070941TCONS_00070941Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR011545DEAD/DEAH_box_helicase_dom
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 64..275
e-value: 1.7E-27
score: 107.3
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 76..253
score: 18.651
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 284..392
e-value: 8.3E-8
score: 32.5
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 287..420
score: 7.83
NoneNo IPR availableGENE3D3.40.50.300coord: 265..404
e-value: 4.3E-13
score: 48.6
NoneNo IPR availableGENE3D3.40.50.300coord: 2..254
e-value: 1.1E-35
score: 122.5
NoneNo IPR availableCDDcd00079HELICccoord: 281..391
e-value: 6.54541E-8
score: 49.1585
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 69..242
e-value: 3.5E-28
score: 98.4
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 45..73
score: 8.114
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 34..247
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 349..391
coord: 179..319

Blast
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BLAST of TCONS_00070941-protein vs. Swiss-Prot (Human)
Match: DDX49 (Probable ATP-dependent RNA helicase DDX49 OS=Homo sapiens GN=DDX49 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.563e-19
Identity = 89/366 (24.32%), Postives = 160/366 (43.72%), Query Frame = 0 
Query:   46 SFTDLSLDVSLVRKLRSFEIRTPTAIQEKCCELMLKGQNLVLNSETGSGKTLAYAVPIVQRIQERRRLKQQKPHPS-AVVLLPSVELCYQVGDVFRSM---LGVNVSLVTSDIPMRLKNTD------VVVTTP-----HALSTYPYNVLNETETIIIDEADILIDKRIGKHGRKDPLFRLMNHMLDMEN--KTFDHDRQFVFVGATMPDSEVKKSRKAMTYIRHWVPDIQMVRGDEAHMMLS---RLDMIYMDVDRGNKLKYFVKAVSQLGT--ENFKMLVFVDTVKTAQKFFQDLTRIDQHHGSTIEKDTFPEQLLLFQKRWTDSLLLLHRDVSRDDRLTSLDYFNKSRQCILITTDVSARGLDF 389
             F +L L   LV + R   ++ PT +Q  C   +L+G++ +  ++TGSGKT A+ +PI+Q++ E        P+    +VL P+ EL YQ+ + FR +   LG+   ++   + M  +  +      VV+ TP     H  S+  +++  +   +++DEAD L+++               +  +D+E         RQ +   AT+ D+  +    A      W          EA   +S   +LD  Y+ V    K  Y V  + +     E++ +++F +T KT Q                         L +  ++++   + LH  + + +R  +L  F  S   ILI TDV++RGLD 
Sbjct:    3 GFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSE-------DPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFSI-KKIRFLVMDEADRLLEQGC------------TDFTVDLEAILAAVPARRQTLLFSATLTDTLRELQGLATNQPFFW----------EAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQI------------------------LCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDI 314
The following BLAST results are available for this feature:
BLAST of TCONS_00070941-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX495.563e-1924.32Probable ATP-dependent RNA helicase DDX49 OS=Homo ... [more]
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