TCONS_00070368-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00070368-protein
Unique Name	TCONS_00070368-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	466

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00070368-protein ID=TCONS_00070368-protein|Name=TCONS_00070368-protein|organism=Clytia hemisphaerica|type=polypeptide|length=466bp
MVLRSLVTSLLNKYLGKYVKDIDSENLTIGLWSGKVSLSELELREEALVE
LDLPIDVNGGYIGQLSVSIPWTSIYVNPVEIEIDEVFILTGPSVEKPYNE
EKEKRKSNAAKQNQIKALEKSKSISEKTESPENGTAADDTLAEKLQAQIL
KNLQVRIKNIHVRYEDKTTIPGQPFSVGAMLYSVTSETTTANWIPTIIDG
SVRKFYKMVNLDSLSLYWNSNTQFSMTSNENWKALMKSQVTNQSSKTHID
YILEPLSLAVHMEVDQDARVSMEYPKFLMQVILKELTLSLSKEQFNGIMK
LLDSFMLMEVNQIYRKYKPLKTVKEDPKAWWQYILKSYTETSYKQWTWEY
MKSHRELYKKYVKLYYQKLCLGFQKNPDPNHLAVIKKLIKEQEENLDVIN
ILIARNQATNEILSHPRVCQDNRMTAFPTQLCCNLLDRMVLFHFYCTPDP
DVQPSAILIECGGDLY

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_043832	XLOC_043832	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00070368	TCONS_00070368	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR026854	VPS13_N
IPR031646	VPS13_N2

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026854	Vacuolar protein sorting-associated protein 13, N-terminal domain	PFAM	PF12624	Chorein_N	coord: 4..116 e-value: 5.1E-37 score: 126.5
IPR031646	Vacuolar protein sorting-associated protein 13, second N-terminal domain	PFAM	PF16908	VPS13	coord: 143..365 e-value: 4.0E-62 score: 210.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..135

Blast

[Close]

BLAST of TCONS_00070368-protein vs. Swiss-Prot (Human)
Match: VP13A (Vacuolar protein sorting-associated protein 13A OS=Homo sapiens GN=VPS13A PE=1 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 5.398e-73
Identity = 144/420 (34.29%), Postives = 239/420 (56.90%), Query Frame = 0

Query:    1 MVLRSLVTSLLNKYLGKYVKDIDSENLTIGLWSGKVSLSELELREEALVELDLPIDVNGGYIGQLSVSIPWTSIYVNPVEIEIDEVFILTGPSVEKPYNEEKEKRKSNAAKQNQIKALE--KSKSISEKTESPENGTAADDTLAEKLQAQILKNLQVRIKNIHVRYEDKTTIPGQPFSVGAMLYSVTSETTTANWIPTIIDGSVRKFYKMVNLDSLSLYWNSNTQ-FSMTSNENWKALMKSQVTNQS-SKTHIDYILEPLSLAVHMEVDQDARVSMEYPKFLMQVILKELTLSLSKEQFNGIMKLLDSFMLMEVNQIYRKYKPLKTVKEDPKAWWQYILKSYTETSYK----QWTWEYMKSHRELYKKYVKLYYQKLCLGFQKNPDPNHLAVIKKLIKEQEENLDVINILIARNQATNEI 412
            MV  S+V  +LN++LG YV D+D+  L++G+W G V+L  L+++E AL +LD+P  V  G+IG L + IPW ++Y  PVE  ++E+++L  PS    Y+  KE+++   AKQ ++K +E  K K + ++   PE      DT AEKL  QI+KNLQV+I +IH+RYED  T   +P S G  L +++ +TT   W+P + D + +   K++ LD+L  YWN  +Q F ++  +N    +K+ + N++      D++  P+S    + +++ +      PK  +++ L  + +  +K Q+  IM+LL+S  +M  N  YRK+KP   +    + WW Y +    E +       W+W++++ HR+  K+Y +LY +KL     K P    L  +++L K     LDV NI IAR  A  E+
Sbjct:    1 MVFESVVVDVLNRFLGDYVVDLDTSQLSLGIWKGAVALKNLQIKENALSQLDVPFKVKVGHIGNLKLIIPWKNLYTQPVEAVLEEIYLLIVPSSRIKYDPLKEEKQLMEAKQQELKRIEEAKQKVVDQEQHLPEK----QDTFAEKLVTQIIKNLQVKISSIHIRYEDDITNRDKPLSFGISLQNLSMQTTDQYWVPCLHDETEKLVRKLIRLDNLFAYWNVKSQMFYLSDYDNSLDDLKNGIVNENIVPEGYDFVFRPISANAKLVMNRRSDFDFSAPKINLEIELHNIAIEFNKPQYFSIMELLESVDMMAQNLPYRKFKPDVPLHHHAREWWAYAIHGVLEVNVCPRLWMWSWKHIRKHRQKVKQYKELYKKKLT---SKKPPGELLVSLEELEK----TLDVFNITIARQTAEVEV 409

The following BLAST results are available for this feature:

BLAST of TCONS_00070368-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00070368-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VP13A	5.398e-73	34.29	Vacuolar protein sorting-associated protein 13A OS...	[more]

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TCONS_00070368-protein (polypeptide) - C. hemisphaerica