TCONS_00070226-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070226-protein
Unique NameTCONS_00070226-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length420

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070226-protein ID=TCONS_00070226-protein|Name=TCONS_00070226-protein|organism=Clytia hemisphaerica|type=polypeptide|length=420bp
MANYPGSGFPNDFDQHQFITPLGFSQPRISPVVNPEEKGLENPPPLPQRN
TQQPYTNFAPYGGGYNSYYGGGNPYQNHLYGNTGGMFQNFGSPMYQNNNS
VTSGLENASQNAFQSAQSFIGAFSSISMMLESTLFAVQNSVRAIAGVADQ
FGHLRHYLLSSAASFYRLVNYYYKKILCVLRLKQPDTQDERFWQDAMSGR
SGTEESRLYASLLFFSLVIATPWFIWKLLKSINFQQKQEEKWFEGSGEHF
VAEVKFPFVARSRDEMNLSKNTIVRLAPKARQPNIKGWLLASDGENQGLV
PANYIKVLGKNRKESTLPTTQTKSHDLVDNKPNVSNDNFNDIYENNEEPN
NTEKDFQFPRRLNRLLRVYLSIQVIKSRMNYMDFTLYRNLSTCLGHNVCD
MVEYLSFSFLLICTFRLNFL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043733XLOC_043733Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070226TCONS_00070226Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001452SH3_domain
IPR007223Peroxin-13_N
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005777peroxisome
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0016560protein import into peroxisome matrix, docking
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016560 protein import into peroxisome matrix, docking
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005777 peroxisome
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001452SH3 domainSMARTSM00326SH3_2coord: 250..309
e-value: 5.8E-7
score: 39.1
IPR001452SH3 domainPFAMPF14604SH3_9coord: 254..306
e-value: 1.6E-9
score: 37.4
IPR001452SH3 domainPROSITEPS50002SH3coord: 245..310
score: 9.47
IPR001452SH3 domainSUPERFAMILY50044SH3-domaincoord: 243..314
IPR007223Peroxin 13, N-terminalPFAMPF04088Peroxin-13_Ncoord: 102..229
e-value: 5.4E-28
score: 98.0
NoneNo IPR availableGENE3D2.30.30.40coord: 230..326
e-value: 1.3E-9
score: 37.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 315..336
NoneNo IPR availableCDDcd11864SH3_PEX13_eumetcoord: 251..307
e-value: 3.54196E-20
score: 82.6778

Blast
[Close]
BLAST of TCONS_00070226-protein vs. Swiss-Prot (Human)
Match: PEX13 (Peroxisomal membrane protein PEX13 OS=Homo sapiens GN=PEX13 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 7.857e-45
Identity = 98/302 (32.45%), Postives = 166/302 (54.97%), Query Frame = 0 
Query:   43 PPPLPQRNTQQ-----------PYTNFAPYGGGY-NSYYGGGNPYQNHLYGNTGGMFQNFGSPMYQNNNSVTSGLENASQNAFQSAQSFIGAFSSISMMLESTLFAVQNSVRAIAGVADQFGHLRHYLLS--SAASFYRLVNYYYKKILCVLRLKQPDTQDERFWQDAMSGRS--GTEE-----SRLYASLLFFSLVIATPWFIWKLLKSINFQQKQEEKWFEGSGEHFVAEVKFPFVARSRDEMNLSKNTIVRLAPKARQPNIKGWLLAS-DGENQGLVPANYIKVLGKNRKESTLPTTQT 322
            PPP+  R +QQ            Y++F+   G Y NS+YGG +PY    YG  G  +          +  V    E +S+ AFQS +S + AF+S+SMM+++T  AV NS RA+  VA+ F  L+ +     SA +  R + Y Y+++  +L L++  +++E  W ++    +  G E+     ++ +   LFF++++  P+ IWKLL + + +      W  G  +H VA  ++ F A S +E++     ++ LA K +QP ++GWLLAS DG+  GL+PANY+K+LGK +   T+ +++ 
Sbjct:   52 PPPILPRPSQQTGSSSVNTFRPAYSSFSSGYGAYGNSFYGGYSPYS---YGYNGLGYNRLRVDDLPPSRFVQQA-EESSRGAFQSIESIVHAFASVSMMMDATFSAVYNSFRAVLDVANHFSRLKIHFTKVFSAFALVRTIRYLYRRLQRMLGLRR-GSENEDLWAESEGTVACLGAEDRAATSAKSWPIFLFFAVILGGPYLIWKLLSTHSDEVTDSINWASGEDDHVVARAEYDFAAVSEEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKRKGRKTVESSKV 348
The following BLAST results are available for this feature:
BLAST of TCONS_00070226-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PEX137.857e-4532.45Peroxisomal membrane protein PEX13 OS=Homo sapiens... [more]
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