TCONS_00070119-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00070119-protein
Unique Name	TCONS_00070119-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	866

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00070119-protein ID=TCONS_00070119-protein|Name=TCONS_00070119-protein|organism=Clytia hemisphaerica|type=polypeptide|length=866bp
SGFVSVGQLVKKYTVYLVQKVWKSVVTTMANSTFEEDDPVVHEIDICLAK
ALAEKLFLFQYPVRPSSFSYDHTPHLATRMKPKQQKVELELGMDIGASTY
CFPRGEQIAHAVDRGVDGNNQNAFFQSTVMDRHMLTSTRATQNSAKYAAA
VYAKGALHITPVKGILQLRPSFNYFDKAEENQKKAAAALKADHEESQDEE
EPEATLVQLRFARNSKNSSKQANQKAQNVDEEWVKMEFHQPDDFRSKLER
KLLYCHQNDFEAPEFTLTSRDYLKVLAPPEEQDSSLPADMPQGVLSLLKL
KTMGFSEQVKALLVTAKVLQFTQLCVLLGGGLDDKIVLKALEQYAMLVQG
CWVVKSEVLYPKGTKSQISGIDAEKIWPTRDYVMFCFNRKRVLSRKEVAS
TSRLPTEELREVLEQMGRQQRAQGWEFMLSADVDFLHKHHDVCTSQMNAW
KAKYEKLQEQLHITEDFFGSDFKDTDFPGLLATHHRKPHTLRRRVTISDE
SSSPDKKNKPARRRSRSQSSQDGGDVVMTSDVKQEPKSPKKSPKSPSRKR
DNEESKDQKKKPKASLDITKTLMEIEAPEILSVTAPEKNADVTMVSDGGE
SGSDIEIKKKSTKSANGNSSSSAIKNKKQRLKQFRRMLLDSDDEEDEDET
RKASEKLGNEVEVGSNPDDEADENSNEDGSNIFVPPVAAGLKKPPLDTKA
SKDRPPSEIFLKELKKFCRDAIRSGCLSLAELKEVLALRQKEAGNILCTG
VEDDLLVKCVLETGASEIPVNWGDCLVPDENRRVFLYKKLNESTDKYRVP
VTDMFKDKLCIKRKDILERLNQIVGEVPTNHTYSKFMVEFCENHNGHWYL
HGTFQSLQKYGTTEET

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_043654	XLOC_043654	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00070119	TCONS_00070119	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006886	RNA_pol_III_Rpc5

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003899	DNA-directed 5'-3' RNA polymerase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 212..232
None	No IPR available	COILS	Coil	Coil	coord: 440..460
None	No IPR available	COILS	Coil	Coil	coord: 179..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 483..704
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..204
IPR006886	DNA-directed RNA polymerase III subunit Rpc5	PFAM	PF04801	Sin_N	coord: 36..459 e-value: 4.2E-117 score: 391.9

Blast

[Close]

BLAST of TCONS_00070119-protein vs. Swiss-Prot (Human)
Match: RPC5 (DNA-directed RNA polymerase III subunit RPC5 OS=Homo sapiens GN=POLR3E PE=1 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 7.697e-108
Identity = 183/445 (41.12%), Postives = 279/445 (62.70%), Query Frame = 0

Query:   29 MANSTFEEDDPVVHEIDICLAKALAEKLFLFQYPVRPSSFSYDHTPHLATRMKPKQQKVELELGMDIGASTYCFPRGEQIAHAVDRGVDGNNQNAFFQSTVMDRHMLTSTRATQNSAKYAAAVYAKGALHITPVKGILQLRPSFNYFDKAEENQKKAAAALKADHEESQDEEEPEATLVQLRFARNSKNSSKQANQKA------QNVDEEWVKMEFHQPDDFRSKLERKLLYC-HQNDFEAPEFTLTSRDYLKVLAPPEEQDSSLPADMPQGVLSLLKLKTMGFSEQVKALLVTAKVLQFTQLCVLLGGGLDDKIVLKALEQYAMLVQGCWVVKSEVLYPKGTKSQISGIDAEKIWPTRDYVMFCFNRKRVLSRKEVASTSRLPTEELREVLEQMGRQQRAQGWEFMLSADVDFLHKHHDVCTSQMNAWKAKYEKLQEQLHITED 466
            MAN   EEDDPVV EID+ LAK+LAEKL+LFQYPVRP+S +YD  PHL+ ++KPKQQKVELE+ +D     YC  +GEQIA  VD      ++ + + S +MD+    S++ T N+++YAAA+Y +G LH+TP+ GILQLRPSF+Y DKA+   ++  AA +A  + SQDE E +   + +RF+R     ++Q   ++      ++ +E WV + ++   D RS+ ER+ L C   +  E  E   +  +YL +L PP +++       P  VLS+ +L+T+  ++Q+K L+   KV+ F  L  LLG  +D   VL+ +++ AMLVQG WVVKS++LYPK + S  SG+ AE +   RD+VM+ F + R + RKEVA+ ++L  E++++ LE M   +  +GWEF+L  D +F+ KH DV   Q   W     KL++  ++ ++
Sbjct:    1 MAN---EEDDPVVQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVDGAC--ADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAG-DSSQDEAEDDVKQITVRFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENTELVKSPSEYLMMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFANLMSLLGPSIDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDFVMWKFTQSRWVVRKEVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDVVQRQHMLWTGIQAKLEKVYNLVKE 439

The following BLAST results are available for this feature:

BLAST of TCONS_00070119-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00070119-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RPC5	7.697e-108	41.12	DNA-directed RNA polymerase III subunit RPC5 OS=Ho...	[more]

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TCONS_00070119-protein (polypeptide) - C. hemisphaerica