TCONS_00070088-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00070088-protein
Unique Name	TCONS_00070088-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	722

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00070088-protein ID=TCONS_00070088-protein|Name=TCONS_00070088-protein|organism=Clytia hemisphaerica|type=polypeptide|length=722bp
MNSTLVNQTTTQNKLNDGQSTFSGKHNGIYLYFTRIMRPIWNYPLVFERI
DYNGKHQLMSRISATDLSWFIVRLQSLKIFLTKYSDTTLSQSPVHRTYHT
LTPKHGSNNSHLTEKSSLMAFLHLVSMSIEGLELWRLICEHQSHVVIHNA
NQEIQEQIRQIAFKDLFSPNGQQLSTQLVNCVMATCMSDNTAVETTSDYL
RNACPSLFSADDAICAKANKIVQNSSSIQSTVERNRNFFEAIKLYSEVPH
LVDLQWACDQFASYYFYEGIVEVCLNIAVKRDPTGVALHYFKNGEPRDDV
EGMEMFNYRNEAYSCITQTLENLLNQITNPATLSIPSRPGPPVNSEISTL
TAESAQNHYDNIITRSLTSRDELFHVALFDWLIKKDQTNTLLQIKSPFLE
HYLITLAAQQHPGNKKTLDLVWMYYEKNNNFIAAAKILLKLAEMQGPSLT
IHNRMEYLSRAVVTTKTFSSTANSNEGEFLQEIEEKLDVARVQLKIFEEL
SKKKSNSPEMNDAMVKLNSKLFDISTLYGEFAEEFSLPECKLDIIACANH
NNETLVKQIWKEIQDKLFTEVRHLPMEEKGKVVAMEMIKHGKEYAQNEQF
FPINFLVNQMEIRACELNLDQTWVFSMFLEMEVPISSLLMTYATLIGLKE
ITWKTLGKPLHLWGSFALNNKFESTRLSMCRSLFETTTSYLVDLDSMDAS
EPEVRVLLQRFKNNQMRLKRML

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_043640	XLOC_043640	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00070088	TCONS_00070088	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007187	Nucleoporin_Nup133/Nup155_C

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 480..500
None	No IPR available	GENE3D	1.10.405.10		coord: 105..249 e-value: 0.0012 score: 18.5
IPR007187	Nucleoporin, Nup133/Nup155-like, C-terminal	PFAM	PF03177	Nucleoporin_C	coord: 151..606 e-value: 2.1E-26 score: 92.7

Blast

[Close]

BLAST of TCONS_00070088-protein vs. Swiss-Prot (Human)
Match: NU155 (Nuclear pore complex protein Nup155 OS=Homo sapiens GN=NUP155 PE=1 SV=1)

HSP 1 Score: 489.574 bits (1259), Expect = 8.809e-157
Identity = 270/753 (35.86%), Postives = 443/753 (58.83%), Query Frame = 0

Query:    8 QTTTQNKLNDGQSTFSGKHNGIYLYFTRIMRPIWNYPLVFERIDYNGKHQLM---SRISATDLSWFIVRLQSLKIFLTKYSDTTLSQSPV----------HRTYHTLTPKHGS------------NNSHLTEKSSLMAFLHLVSMSIEGLELWRLICEHQSHVVIHNANQEIQEQIRQIAFKDLFSPNGQQLSTQLVNCVMATCMSDNTAVETTSDYLRNACPSLFSADDAICAKANKIVQNSSSIQSTVERNRNFFEAIKLYSEVPHLVDLQWACDQFASYYFYEGIVEVCLNIAVKRDPTGVALHYFKNGEPRDDVEGMEMFNYRNEAYSCITQTLENLLNQI-TNPATLSIPSRPGPPV-NSEISTLTAESAQNHYDNIITRSLTSRDELFHVALFDWLIKKDQTNTLLQIKSPFLEHYLITLAAQQHPGNKKTLDLVWMYYEKNNNFIAAAKILLKLAEMQGPSLTIHNRMEYLSRAVVTTKTFSSTANSN---EGEFLQEIEEKLDVARVQLKIFEELSKKKSNSPEMNDAMVKLNSKLFDISTLYGEFAEEFSLPECKLDIIACANHNNETLVKQIWKEIQDKLFTEVRHLPMEEKGKVVAMEMIKHGKEYAQNEQFFPINFLVNQMEIRACELNLDQTWVFSMFLEMEVPISSLLMTYATLIGLKEITWKTLGKPLHLWGSFAL---------NNKFESTRLSMCRSLFETTTSYLVDLDSMDASEPEVRVLLQRFKNNQMRLKRM 721
            Q T  + +   +  +SGKHNGI +YF+RIM  IW+  LV ERI  +G  ++    S +    L   +  L+ L+ FL +  ++  +  P+           R    + P++G+            + + L+EK SL A   LV  S + L LW+L+CEHQ  +++    +E+QEQ++   FKDL   + ++L+  L+  ++   + DN AV+  S +L++ CP L+S DDAIC+KAN+++Q S  +Q+  E+ R   E++K Y ++ + VDL   C Q+    FYEG+VE+ L  A K+DP G+ LH++K+GEP +D+ G++ F  R  +Y CIT TL+ L+NQ    P + S+P +PGPPV +S+ + L+ E A +H++ ++  S  S+DELF +AL++WLI+ D  + LLQ+ SPFLE +L+ +A        + +DL+W YYEKN +F  AA++L +LA+M    +++  R+EY++RA+++ K  SSTA S+   +GEFL E+EEK++VAR+QL+I E L ++ S+   + DA+ +L+S+L DI+ LYGEFA+ F L ECKL II CA +++  LV+ +W++I +K  ++   L   ++   ++++++  GK YA   +FFP++F+V  +E + C LN D  +V     E+ VP+  LL  Y  L   ++  W  + KPLHL     +         +      R        +    YLV+L SM +S   V+ +   FK+ Q +L+R+
Sbjct:  645 QATNMSCVTGPEIVYSGKHNGICIYFSRIMGNIWDASLVVERIFKSGNREITAIESSVPCQLLESVLQELKGLQEFLDR--NSQFAGGPLGNPNTTAKVQQRLIGFMRPENGNPQQMQQELQRKFHEAQLSEKISLQAIQQLVRKSYQALALWKLLCEHQFTIIVAELQKELQEQLKITTFKDLVIRD-KELTGALIASLINCYIRDNAAVDGISLHLQDICPLLYSTDDAICSKANELLQRSRQVQNKTEKERMLRESLKEYQKISNQVDLSNVCAQYRQVRFYEGVVELSLTAAEKKDPQGLGLHFYKHGEPEEDIVGLQAFQERLNSYKCITDTLQELVNQSKAAPQSPSVPKKPGPPVLSSDPNMLSNEEAGHHFEQMLKLSQRSKDELFSIALYNWLIQVDLADKLLQVASPFLEPHLVRMAKVDQ-NRVRYMDLLWRYYEKNRSFSNAARVLSRLADMHSTEISLQQRLEYIARAILSAK--SSTAISSIAADGEFLHELEEKMEVARIQLQIQETLQRQYSHHSSVQDAVSQLDSELMDITKLYGEFADPFKLAECKLAIIHCAGYSDPILVQTLWQDIIEKELSDSVTLSSSDRMHALSLKIVLLGKIYAGTPRFFPLDFIVQFLEQQVCTLNWDVGFVIQTMNEIGVPLPRLLEVYDQLFKSRDPFWNRMKKPLHLLDCIHVLLIRYVENPSQVLNCERRRFTNLCLDAVCGYLVELQSMSSSV-AVQAITGNFKSLQAKLERL 1390

The following BLAST results are available for this feature:

BLAST of TCONS_00070088-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00070088-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NU155	8.809e-157	35.86	Nuclear pore complex protein Nup155 OS=Homo sapien...	[more]

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TCONS_00070088-protein (polypeptide) - C. hemisphaerica