TCONS_00070031-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00070031-protein
Unique Name	TCONS_00070031-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	298

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00070031-protein ID=TCONS_00070031-protein|Name=TCONS_00070031-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
KFSPNSATPSEKRANSAPPSTMKPPLQRALDHKNRLLQYDRNFTKRTKVI
DDESDYFASDNRWLSNKQRNLLTKKEQDLRDKRFASRLDKKFTIDFAGRK
IVESEENNHMYIEEDISTPIDSLKRNEQLTNIESDDRNPLIDPRIGVQPP
TFHPAERDETSEETRPKNVWKGSSTNNHKKRLQDNQLQEISDQGMCMSMH
QPWASLLVHGIKKLEGRSWYTPHRGRLWIASTAQRTDQEDIKHVVDDYKR
MYSDIPSHRYPKDYPSSALLGCVNVVDCASNEEYFQKHPMCTEEIRNN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_043599	XLOC_043599	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00070031	TCONS_00070031	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007374	ASCH_domain
IPR015947	PUA-like_domain

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007374	ASCH domain	PFAM	PF04266	ASCH	coord: 197..290 e-value: 2.3E-15 score: 57.0
None	No IPR available	GENE3D	2.30.130.30		coord: 194..296 e-value: 2.3E-20 score: 72.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..182
None	No IPR available	CDD	cd06554	ASCH_ASC-1_like	coord: 194..289 e-value: 4.73525E-36 score: 125.906
IPR015947	PUA-like domain	SUPERFAMILY	88697	PUA domain-like	coord: 191..232 coord: 267..285

Blast

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BLAST of TCONS_00070031-protein vs. Swiss-Prot (Human)
Match: TRIP4 (Activating signal cointegrator 1 OS=Homo sapiens GN=TRIP4 PE=1 SV=4)

HSP 1 Score: 229.18 bits (583), Expect = 5.940e-71
Identity = 126/288 (43.75%), Postives = 186/288 (64.58%), Query Frame = 0

Query:   22 MKPPLQRALDHKNRLLQYDRNFTKRTKVIDDESDYFASD-NRWLSNKQRNLLTKKEQDLRDKRFASRLDKKFTIDFAGRKIVESEENN----HMYIEEDISTPIDSLKRNEQLTNIESDDRNPL---IDPRIGVQPPTFHPAERDETSEETRPKNVWKGSSTN------NHKKRLQDNQLQEISDQGMCMSMHQPWASLLVHGIKKLEGRSWYTPHRGRLWIASTAQRTDQEDIKHVVDDYKRMYS-DIPSHRYPKDYPSSALLGCVNVVDCASNEEYFQKHPMCTEE 294
            +K  L++A+ HK++LL++DR   +RT+VIDDESDYFASD N+WLS  +R  L K+E++LR+ R ASRL KK TIDFAGRKI+E EEN+    H  ++E I   I +   N+ LT ++     PL   ++P +   PP +     D T   ++ K  ++ S          H+ R+QD + QE  D G C+S+HQPWASLLV GIK++EGRSWYTPHRGRLWIA+TA++   +++  +   Y+ +   D+    +P DYPS  LLGCV+++DC S +++ ++ P  ++E
Sbjct:  255 IKSGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQWLSKLERETLQKREEELRELRHASRLSKKVTIDFAGRKILE-EENSLAEYHSRLDETIQA-IANGTLNQPLTKLDRSSEEPLGVLVNPNMYQSPPQW----VDHTGAASQ-KKAFRSSGFGLEFNSFQHQLRIQDQEFQEGFDGGWCLSVHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKKPSPQEVSELQATYRLLRGKDV---EFPNDYPSGCLLGCVDLIDCLSQKQFKEQFPDISQE 532

The following BLAST results are available for this feature:

BLAST of TCONS_00070031-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00070031-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TRIP4	5.940e-71	43.75	Activating signal cointegrator 1 OS=Homo sapiens G...	[more]

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TCONS_00070031-protein (polypeptide) - C. hemisphaerica