TCONS_00069728-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00069728-protein
Unique Name	TCONS_00069728-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	826

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00069728-protein ID=TCONS_00069728-protein|Name=TCONS_00069728-protein|organism=Clytia hemisphaerica|type=polypeptide|length=826bp
MRSSRSRVSDVSDASSHDSSHSSTTSEYFQQEQNKVINSSSTTSNNKQTI
EILSSDEDEDDGLPKAISSSTASNNKQLAEEFSHMNIMDAASHERELKTL
EFTLKGQQQLLKFFGPKTADGGQKMKDKIDQITKRIDYLHSHPPEPDTGS
ETADSSLKVQLPSMGAKMLEHPPPPPMAGHGAQKEYFGGRMTSKRLQEVG
KMTKEAIEHLHKSLDTCPAPHEEAEDPEKLKVTLMTHQRQALAWLTWRET
QIPSGGILADDMGLGKTLTMISLTLKSKQKNLSKLTELPKDSKLIKSKST
IIVCPASLVHQWHKEIEKRVEKLQLRVHLYHGPNRETRPNRLVNYDIVLT
TYNIVSIEGKPFIEEEKEKNNKPALGEWLDSTQPKKAESGPIFKVFWRRI
ILDEGHTIKNHKTNVSIAICSLEAESRWVVTGTPIQNNTMDLYSLIKFLR
VSPFNELKFWKHEVDNKTASGRKRMNSIVTSILLRRTKDQNDAKTGKPLV
SLPNRSCIVHKLKLSESEKDVYEVMQKFSKNMFTQFMNSKKDGESTSSKK
HQLSDSEMPKEILGMDVDELLKMIGLSVVNARNAGCLLVLVLRLRQCCSH
MSLMCQPLDSDLCKSEGIDIPLEEQLGNMSIDESSPMFSRPMEFKGGYAS
TKIQTLLKELKSMGRTSQTRKPIKSVVVSQWTRMLEIVASHLKRSGIKYE
FITGSVNAKKRADIVEDFNNEIDPQVMLVSLKAGGVGLNLIGGSHLFLMD
QHWNPSLEDQACDRIYRVGQLNDCVIHKFLCEDTVEERIVQLQEKKKALA
DTVLYGGKSQKLTLDDLKLIFGIGSR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_043416	XLOC_043416	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00069728	TCONS_00069728	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001650	Helicase_C
IPR014001	Helicase_ATP-bd
IPR000330	SNF2_N
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 782..802
None	No IPR available	GENE3D	3.40.50.10810		coord: 236..487 e-value: 2.8E-53 score: 180.0
None	No IPR available	GENE3D	3.40.50.300		coord: 646..807 e-value: 8.2E-29 score: 99.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..75
None	No IPR available	CDD	cd00079	HELICc	coord: 652..776 e-value: 5.13153E-20 score: 86.5228
None	No IPR available	CDD	cd00046	DEXDc	coord: 254..434 e-value: 1.95799E-14 score: 70.444
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 686..769 e-value: 8.0E-17 score: 71.9
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 652..769 e-value: 1.7E-11 score: 44.4
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 652..818 score: 13.208
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 230..460 e-value: 7.4E-28 score: 108.5
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 247..452 score: 16.306
IPR000330	SNF2-related, N-terminal domain	PFAM	PF00176	SNF2_N	coord: 254..604 e-value: 6.9E-69 score: 232.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 218..358 coord: 389..486
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 578..607 coord: 498..535 coord: 643..821

Blast

[Close]

BLAST of TCONS_00069728-protein vs. Swiss-Prot (Human)
Match: TTF2 (Transcription termination factor 2 OS=Homo sapiens GN=TTF2 PE=1 SV=2)

HSP 1 Score: 593.193 bits (1528), Expect = 0.000e+0
Identity = 342/749 (45.66%), Postives = 451/749 (60.21%), Query Frame = 0

Query:  120 DGGQKMKDKIDQITKRIDYLHSHPPEPDTGSETADSSLKVQLP--------SMGAKMLEHPPPPPMAG----------------HGAQKEYFGGRMTSKRLQEVGKMTKEAIEHLHKSLDTCPAPHEEAEDPEKLKVTLMTHQRQALAWLTWRETQIPSGGILADDMGLGKTLTMISLTLKSKQKNL-------SKLTELPKDSKL-IKSKSTIIVCPASLVHQWHKEIEKRVEKLQLRVHLYHGPNRETRPNRLVNYDIVLTTYNIVSIEGKPFIEEEKEKNNKPALGEWLDSTQPKKAESGPIFKVFWRRIILDEGHTIKNHKTNVSIAICSLEAESRWVVTGTPIQNNTMDLYSLIKFLRVSPFNELKFWKHEVDNKTASGRKRMNSIVTSILLRRTKDQNDAKTGKPLVSLPNRSCIVHKLKLSESEKDVYEVMQKFSKNMFTQFMNSKKDGESTSSKKHQLSDSEMPKEILGMDVDELLKMIGLSVVNARNAGCLLVLVLRLRQCCSHMSLMCQPLDSDLCKSEGIDIPLEEQLGNMSIDE---SSP--------MFSRPMEFKGGYASTKIQTLLKELKSMGRTSQTRKPIKSVVVSQWTRMLEIVASHLKRSGIKYEFITGSVNAKKRADIVEDFNNEIDPQVMLVSLKAGGVGLNLIGGSHLFLMDQHWNPSLEDQACDRIYRVGQLNDCVIHKFLCEDTVEERIVQLQEKKKALADTVLYG-GKS-QKLTLDDLKLIFGI 823
            D GQK+   I QI +  + L      P+ G+    +S   Q+P        + G   L  P P P  G                 G   + + G      +  V K+T EAI  LH+SL++CP     AEDP  LKV L+ HQ+QALAWL WRE+Q P GGILADDMGLGKTLTMI+L L  K +         + LT L KD      S  T+I+CPASL+H W  E+EKRV   +LRV+LYHGPNR++R   L  YDIV+TTY++V+ E    I   K++   P     ++ T      S P+ ++ W RIILDE H +KN +   SIA+C L+A +RW VTGTPIQNN +D+YSL+KFLR SPF+E   W+ +VDN +  G +R++ +  S+LLRRTKDQ D+ TG+PLV LP R   +H LKLSE E+ VY V    S++    ++   K  ES  ++  +  ++   +  L    +E           +     +L  +LRLRQCC H+SL+   LD    K EG+ + LEEQL  +++ E   S P         F +   F+G   STKI +LL EL+++ R S ++K   SV+VSQWT ML++VA HLK+ G+ Y  I GSVN K+R D+VE FN+   PQVML+SL AGGVGLNL GG+HLFL+D HWNPSLEDQACDRIYRVGQ  D VIH+F+CE TVEE+I+QLQEKKK LA  VL G G+S  KLTL DL+++FGI
Sbjct:  438 DKGQKL---IKQIQELEEVLSGLTLSPEQGTNEKSNS---QVPQQSHFTKTTTGPPHLVPPQPLPRRGTQPVGSLELKSACQVTAGGSSQCYRGHTNQDHVHAVWKITSEAIGQLHRSLESCPGETVVAEDPAGLKVPLLLHQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTALTWLSKDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARVLSTYDIVITTYSLVAKE----IPTNKQEAEIPGANLNVEGT------STPLLRIAWARIILDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGERLSILTKSLLLRRTKDQLDS-TGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARSRSALQSYL---KRHESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVH-ILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSSTVSLNGTFFKMELFEGMRESTKISSLLAELEAIQRNSASQK---SVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSGESVTKLTLADLRVLFGI 1162

The following BLAST results are available for this feature:

BLAST of TCONS_00069728-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00069728-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TTF2	0.000e+0	45.66	Transcription termination factor 2 OS=Homo sapiens...	[more]

You are here

TCONS_00069728-protein (polypeptide) - C. hemisphaerica