TCONS_00069466-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00069466-protein
Unique NameTCONS_00069466-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length99

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00069466-protein ID=TCONS_00069466-protein|Name=TCONS_00069466-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
FCHYLHAHFIFLHVGQLSFQIVKRGYRTSTKIIYNMDKPKLARVMKILGR
TGSQGQCTQVRVEFIDDTNRSIIRNVKGPVREGDVLTLLESEREARRLR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043293XLOC_043293Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00069466TCONS_00069466Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000289Ribosomal_S28e
IPR028626Ribosomal_S28e_CS
IPR012340NA-bd_OB-fold
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 88..99
NoneNo IPR availableGENE3D2.40.50.140coord: 37..98
e-value: 5.7E-38
score: 127.9
IPR000289Ribosomal protein S28ePFAMPF01200Ribosomal_S28ecoord: 38..98
e-value: 2.0E-33
score: 114.0
IPR000289Ribosomal protein S28ePRODOMPD005541coord: 40..80
e-value: 1.0E-15
score: 196.0
IPR000289Ribosomal protein S28eHAMAPMF_00292Ribosomal_S28ecoord: 36..99
score: 19.958
IPR000289Ribosomal protein S28eCDDcd04457S1_S28Ecoord: 40..99
e-value: 2.1711E-34
score: 113.499
IPR028626Ribosomal protein S28e conserved sitePROSITEPS00961RIBOSOMAL_S28Ecoord: 90..98
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 36..99

Blast
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BLAST of TCONS_00069466-protein vs. Swiss-Prot (Human)
Match: RS28 (40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.738e-35
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 0 
Query:   40 KLARVMKILGRTGSQGQCTQVRVEFIDDTNRSIIRNVKGPVREGDVLTLLESEREARRLR 99
            KLARV K+LGRTGSQGQCTQVRVEF+DDT+RSIIRNVKGPVREGDVLTLLESEREARRLR
Sbjct:   10 KLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARRLR 69
The following BLAST results are available for this feature:
BLAST of TCONS_00069466-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS281.738e-3593.3340S ribosomal protein S28 OS=Homo sapiens GN=RPS28... [more]
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