TCONS_00068982-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068982-protein
Unique NameTCONS_00068982-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length180

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068982-protein ID=TCONS_00068982-protein|Name=TCONS_00068982-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MTLQNETPPILASNFSIIVGVIEQYGWFLLIGCILVMYLYNKYKPTLMKM
KQNHEDWKEAEINKKDPDRVHKVQLSMEQARLKLQQQVNVDSEKRKEADL
KREEAQRQKKIEEWENHQQGRGYHNKSRFSNPSPDNDSGSNNTSKPKKKN
TTMKSDFNALSGDGGGSCSYRPSSRFSGGG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042983XLOC_042983Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068982TCONS_00068982Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009703Selenoprotein_S
Vocabulary: Cellular Component
TermDefinition
GO:0030176integral component of endoplasmic reticulum membrane
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
cellular_component GO:0030176 integral component of endoplasmic reticulum membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 93..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..180
IPR009703Selenoprotein SPFAMPF06936Selenoprotein_Scoord: 20..180
e-value: 1.9E-39
score: 135.4

Blast
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BLAST of TCONS_00068982-protein vs. Swiss-Prot (Human)
Match: SELS (Selenoprotein S OS=Homo sapiens GN=SELENOS PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 2.293e-27
Identity = 56/169 (33.14%), Postives = 96/169 (56.80%), Query Frame = 0 
Query:   16 SIIVGVIEQYGWFLLIGCILVMYLYNKYKPTLMKMKQNHEDWKEAEINKKDPDRVHKVQLSMEQARLKLQQQVNVDSEKRKEADLKREEAQRQKKIEEWENHQQGRGYHNKSRFSNPSPDNDSGSNNTSKPKKKN---TTMKSDFNALSGDGGGSCSYRPSSR--FSGG 179
            + +  ++  YGW+++  CIL+  ++ K    L  ++Q   D   A +   +PD V K Q ++  ARLK+Q+++N   EK KE   + EE +R++KIE W++ Q+G+ Y   ++   P  ++  G + +S  K+K+         +N LSG+GGG+CS+RP  R   SGG
Sbjct:   24 TTVGSLLATYGWYIVFSCILLYVVFQKLSARLRALRQRQLDRAAAAV---EPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAK--KPQEEDSPGPSTSSVLKRKSDRKPLRGGGYNPLSGEGGGACSWRPGRRGPSSGG 187
The following BLAST results are available for this feature:
BLAST of TCONS_00068982-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SELS2.293e-2733.14Selenoprotein S OS=Homo sapiens GN=SELENOS PE=1 SV... [more]
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