TCONS_00068832-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068832-protein
Unique NameTCONS_00068832-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length149

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068832-protein ID=TCONS_00068832-protein|Name=TCONS_00068832-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MASITSKFGLPLRQTIRHCTSQMKYDGPVEKCVNSVQILGRVGQDPITRG
ENDNFVTFSMATSKTYAKKNMTGETDYNTRTQWHNITVFRPFLIERVQKQ
ISKGTRVMVQGAIEYVDYTKPDGNRVLMTRIVPDDIFILSGTDHDAQTH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042912XLOC_042912Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068832TCONS_00068832Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011344ssDNA-bd
IPR000424Primosome_PriB/ssb
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003697single-stranded DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
molecular_function GO:0003697 single-stranded DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePIRSFPIRSF002070SSBcoord: 29..141
e-value: 2.0E-24
score: 84.5
NoneNo IPR availableGENE3D2.40.50.140coord: 22..141
e-value: 1.4E-23
score: 82.5
NoneNo IPR availableCDDcd04496SSB_OBFcoord: 36..139
e-value: 1.2153E-18
score: 75.3413
IPR011344Single-stranded DNA-binding proteinTIGRFAMTIGR00621TIGR00621coord: 31..141
e-value: 6.5E-22
score: 76.6
IPR000424Primosome PriB/single-strand DNA-bindingPFAMPF00436SSBcoord: 33..136
e-value: 2.3E-19
score: 69.3
IPR000424Primosome PriB/single-strand DNA-bindingPROSITEPS50935SSBcoord: 33..140
score: 19.441
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 32..138

Blast
[Close]
BLAST of TCONS_00068832-protein vs. Swiss-Prot (Human)
Match: SSBP (Single-stranded DNA-binding protein, mitochondrial OS=Homo sapiens GN=SSBP1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.465e-21
Identity = 50/133 (37.59%), Postives = 77/133 (57.89%), Query Frame = 0 
Query:   12 LRQTIRHCTSQMKYDGPVEKCVNSVQILGRVGQDPITRG-ENDNFVT-FSMATSKTY--AKKNMTGETDYNTRTQWHNITVFRPFLIERVQKQISKGTRVMVQGAIEYVDYTKPDGNRVLMTRIVPDDIFILS 140
            LRQ +RH  S+      +E+ +N V +LGRVGQDP+ R  E  N VT FS+AT++ +      +    D + +T WH I+VFRP L +   + + KG+R+ ++G I+Y +Y   +  R   T I+ D+I  LS
Sbjct:   10 LRQFVRH-ESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLS 141
The following BLAST results are available for this feature:
BLAST of TCONS_00068832-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SSBP8.465e-2137.59Single-stranded DNA-binding protein, mitochondrial... [more]
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