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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00068399-protein ID=TCONS_00068399-protein|Name=TCONS_00068399-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1281bp MIYKMLILKLLLIVSCWIDHAALLGIPKITEMSIVKPPAIVGNSVLTLLC KATGEGPIKVRWMFKGKTATENNFFESAKDAEGTSTLRVFDVSLEHSGIY TCTAENRFGKVFNEKEVVVYKKGKFSPPHSREDPVKTIQATVGVPLTIEC PPHEEGIGYKIVWGSLPLGGNPLLWLTGVTPLKNAYFGNHGEFHVQALTA DLIKLIQDLGGVSCILYLDNAVVSNQINIDIGSQDINKAPVDNPPKMGRK LPANTNATVGKDRQVDLTCGADGYPYPKITWYKDGVSIEVLNEKKDSNFT VTGNGMILRINPVTSRAAGKYKCVAENFLGKEENEGTLTVNSVPKFVKGQ ELQIRYDVIHDQKLVLSCRGEGTPSVSYQWYHNGSIVTNNERYKLDGGDL IIKSAGFDHIGLYMCLIRNFVGLDVQPTYVIVEATPPTLIKGMDDPKYIF KGEDQELKCSFRSAPAPSVTWQKDGRDISSANTGSLILKSVSDESSGRYN CTATNVEGSAASIAQVIAVVKTKITNAPATLKTKVGTKMLELYCNAVYET QLLDVKFQWLRKGKPFESNDRVYLERRLEGPKRVLFLTDIEMSDAGEYKC RVFTHVKGDEGNIISEDVKTGSVAVIGKPPSPSNLAFSGNCSDTDSDIEI TWEQRNNFGQSISTYIIEYGDRNADEDEWFKYKGNMVISEDKLSIPVKNL PGSTDLKFRLTAVTYYESETFKSDSVVIVPDSCSTPAGAPAAWVATGLRT NNKKAGQLVVEWDEPADIYKKGPNFCVEVTYQKLPDGEIKTVCIKDGNNF VLEDAGEGEKYSISVRGKNDEGSGPETKKVLTSGAPAITGKPENLQVKYD ANITFNWDKVQHATKYNFYYQEDASSRRRRRRRDTSSETKVTVTNNQTVL IPKDLASQTSYSFYVKAANDWMEGDASETQTFQTKPSAPNTPSNADIDII GHAVQVKWDPPKRSKPEVTGYVIRYKKKGSGTYFVKECDADCRDMFLTDL EPFAYYTVELQAKSSAGLGDPIIFDGLVVSSPDKPGKPAPPPYVNENATI INVNFMLPEEGYVGGLPDNFTIFYYPKDDQSDVKSISADFPNKENLTIEG ITSGVYILYAVGENALGRSAPSGKTERTYVAPTMVPVPAHTDEDKAFYEE LWFLILIIIILLILLIAIIICCCLNRRGGKYPVDAKEKERGGWDDNVPLK DYASEPPSDNGPVSNGKPPVRSASQNSLKKPLTDDMDDDDDKDSLDDYGE DSKFNEDGSFIGQYGDEEKIKSKDKNGTTKV Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR003598 | Immunoglobulin subtype 2 | SMART | SM00408 | igc2_5 | coord: 40..109 e-value: 5.8E-9 score: 45.8 coord: 359..422 e-value: 3.5E-6 score: 36.5 coord: 260..330 e-value: 2.6E-10 score: 50.3 coord: 450..508 e-value: 6.8E-9 score: 45.5 coord: 535..607 e-value: 0.17 score: 14.4 |
IPR003599 | Immunoglobulin subtype | SMART | SM00409 | IG_3c | coord: 444..519 e-value: 1.0E-4 score: 31.7 coord: 529..619 e-value: 2.1 score: 17.4 coord: 37..120 e-value: 6.8E-7 score: 38.9 coord: 254..341 e-value: 6.1E-8 score: 42.4 coord: 353..433 e-value: 0.0022 score: 27.2 |
IPR003961 | Fibronectin type III | SMART | SM00060 | FN3_2 | coord: 742..824 e-value: 0.14 score: 21.3 coord: 1035..1119 e-value: 19.0 score: 9.1 coord: 629..718 e-value: 0.33 score: 20.0 coord: 839..924 e-value: 0.083 score: 22.0 coord: 939..1019 e-value: 1.2E-5 score: 34.8 |
IPR003961 | Fibronectin type III | PFAM | PF00041 | fn3 | coord: 952..1020 e-value: 1.3E-7 score: 31.7 |
IPR003961 | Fibronectin type III | PROSITE | PS50853 | FN3 | coord: 1037..1133 score: 10.288 |
IPR003961 | Fibronectin type III | PROSITE | PS50853 | FN3 | coord: 744..837 score: 10.525 |
IPR003961 | Fibronectin type III | PROSITE | PS50853 | FN3 | coord: 938..1033 score: 15.44 |
IPR003961 | Fibronectin type III | PROSITE | PS50853 | FN3 | coord: 841..937 score: 12.048 |
IPR003961 | Fibronectin type III | PROSITE | PS50853 | FN3 | coord: 631..738 score: 9.649 |
IPR003961 | Fibronectin type III | CDD | cd00063 | FN3 | coord: 840..934 e-value: 1.10468E-6 score: 47.1059 |
IPR003961 | Fibronectin type III | CDD | cd00063 | FN3 | coord: 939..1021 e-value: 5.62674E-10 score: 57.1211 |
IPR003961 | Fibronectin type III | CDD | cd00063 | FN3 | coord: 746..830 e-value: 9.18384E-5 score: 41.3279 |
IPR003961 | Fibronectin type III | CDD | cd00063 | FN3 | coord: 629..714 e-value: 1.02053E-5 score: 44.0243 |
IPR003961 | Fibronectin type III | SUPERFAMILY | 49265 | Fibronectin type III | coord: 1032..1126 |
IPR003961 | Fibronectin type III | SUPERFAMILY | 49265 | Fibronectin type III | coord: 628..829 |
IPR003961 | Fibronectin type III | SUPERFAMILY | 49265 | Fibronectin type III | coord: 852..1021 |
IPR013098 | Immunoglobulin I-set | PFAM | PF07679 | I-set | coord: 255..340 e-value: 1.2E-14 score: 54.1 coord: 43..118 e-value: 9.0E-12 score: 44.8 |
IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 353..437 e-value: 1.1E-13 score: 50.5 |
IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 31..163 e-value: 1.5E-14 score: 53.6 |
IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 492..523 e-value: 0.0012 score: 18.3 |
IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 638..725 e-value: 7.0E-9 score: 35.5 |
IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 249..352 e-value: 1.9E-18 score: 65.8 coord: 524..637 e-value: 3.9E-9 score: 35.8 |
IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 438..491 e-value: 1.5E-12 score: 47.0 |
IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 726..824 e-value: 2.3E-8 score: 33.5 |
IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 878..933 e-value: 1.0E-8 score: 34.9 |
IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 934..1024 e-value: 1.2E-15 score: 57.1 |
IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 1029..1134 e-value: 0.001 score: 18.6 |
IPR026966 | Neurofascin/L1/NrCAM, C-terminal domain | PFAM | PF13882 | Bravo_FIGEY | coord: 1176..1267 e-value: 5.5E-15 score: 56.4 |
None | No IPR available | GENE3D | 2.60.40.1410 | | coord: 825..877 e-value: 0.014 score: 14.4 |
None | No IPR available | PFAM | PF13927 | Ig_3 | coord: 449..505 e-value: 1.8E-11 score: 44.4 coord: 358..419 e-value: 1.6E-7 score: 31.8 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 926..945 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1184..1281 |
None | No IPR available | CDD | cd00096 | Ig | coord: 540..602 e-value: 1.69996E-4 score: 40.1651 |
None | No IPR available | CDD | cd00096 | Ig | coord: 456..515 e-value: 9.86664E-9 score: 52.8767 |
None | No IPR available | CDD | cd00096 | Ig | coord: 46..111 e-value: 7.88452E-11 score: 59.0399 |
IPR007110 | Immunoglobulin-like domain | PROSITE | PS50835 | IG_LIKE | coord: 344..433 score: 9.99 |
IPR007110 | Immunoglobulin-like domain | PROSITE | PS50835 | IG_LIKE | coord: 437..518 score: 12.822 |
IPR007110 | Immunoglobulin-like domain | PROSITE | PS50835 | IG_LIKE | coord: 522..619 score: 10.172 |
IPR007110 | Immunoglobulin-like domain | PROSITE | PS50835 | IG_LIKE | coord: 27..118 score: 13.747 |
IPR007110 | Immunoglobulin-like domain | PROSITE | PS50835 | IG_LIKE | coord: 245..339 score: 12.931 |
IPR007110 | Immunoglobulin-like domain | SUPERFAMILY | 48726 | Immunoglobulin | coord: 436..510 |
IPR007110 | Immunoglobulin-like domain | SUPERFAMILY | 48726 | Immunoglobulin | coord: 524..607 |
IPR007110 | Immunoglobulin-like domain | SUPERFAMILY | 48726 | Immunoglobulin | coord: 256..347 |
IPR007110 | Immunoglobulin-like domain | SUPERFAMILY | 48726 | Immunoglobulin | coord: 357..437 |
IPR007110 | Immunoglobulin-like domain | SUPERFAMILY | 48726 | Immunoglobulin | coord: 37..122 |
Blast
BLAST of TCONS_00068399-protein vs. Swiss-Prot (Human)
Match: L1CAM (Neural cell adhesion molecule L1 OS=Homo sapiens GN=L1CAM PE=1 SV=2) HSP 1 Score: 229.565 bits (584), Expect = 4.398e-61 Identity = 314/1322 (23.75%), Postives = 522/1322 (39.49%), Query Frame = 0
Query: 34 IVKPPAIVGNSV----------LTLLCKATGEGPIKVRWM-----FKGKTATENNFFESAKDAEGTSTLRVFDVSLEHSGIYTCTAENRFGKVFNEKEVVVYKKGKFSPPHSREDPVKTIQATVGVPLTIECPPHEEGIGYKIVWGS-----------LPLGGNPLLWLTGVTPLKNAYFGNHGEFHVQALTADLIKLIQDLGGVSCILYLDNAVVSNQINIDIGSQDINKAPVDNPPKMGRKLPANTNATVGKDRQVDLTCGADGYPYPKITWYKDGVSIEVLNEKKDSNFTVTGNGMILRINPVTSRAAGKYKCVAENFLGKEENEGTLTVNSVPKFVKGQELQIRYDVIHDQKLVLSCRGEGTPSVSYQWYHNGSIV---TNNERYKLDGGDLIIKSAGFDHIGLYMCLIRNFVGLDVQPTYVIVEATPPTLIKGMDDPKYIFKGEDQELKCSFRSAPAPSVTW--------QKDGRDISSANTGSLILKSVSDESSGRYNCTATNVEGSAASIAQVIAVVKTKITNAPATLKTKVGTKMLELYCNAVYETQLLDVKFQWLRKGKPFES---NDRVYLERRLEGPKRVLFLTDIEMSDAGEYKCRVFTHVKGDEGNIISEDVKTGSVAVIGKPPSPSNLAFSGNCSDTDSDIEITWEQRNNFGQSISTYIIEYGDRNADEDEWF---KYKGNMVISEDKLSIPVKNLPGSTDLKFRLTAVTYY-ESETFKSDSVVIVPDSCSTPAGAPAAWVATGLRTNNKKAGQLVVEWDEPADIYKKGPNFCVEVTYQ-KLPDGEIKTVCIKDGNNFVLEDAGEGEKYSISVRGKNDEGSGPETKKVLTSGA---PAITGKPENLQVKYDANITFNWDKVQ------HATKYNFYYQEDASSRRRRRRRDTSSETKVTVTNNQTVLIPKDLASQTSYSFYVKAANDWMEGDASETQTFQTKPSAPNTPSNADIDIIGH-AVQVKWDPPKRSKPEVTGYVIRYK---KKGSGTYFVKECDADCRDMFLTDLEPFAYYTVELQAKSSAGLGDPIIFDG--LVVSSPDKPGKPAPPPYVNENATIINVNFMLPEEGYVGGLPDNFTIFYYPKDDQSDVKSISADFP--NKENLTIEGITSGVYILYAVGENALGRSAPSGKTERTYVAPTMVPVPAHTDEDKAFYEELWFLILIIIILLILLIAIIICCCLNRRGGKYPVDAKEKERGGWDDNV-PLKD-----YASEPPSDNGPVSNGKPPVRSASQNSLK---KPLTDDMDDDDDKDSLDDYGE--DSKFNEDGSFIGQYG---DEEKIKSKDKNGTT 1279
+++PP I S ++L C+A+G+ ++ RW FK K ++S T T + + GIY C A N+ G + E+ + +G P ++ VK ++ G + + C P +I W + + +G N L+ V N H ++ A +IQ + ID+ + N +D P++ ++++ + + + L C A+G+P P I W + + T + L++ V G+Y+C+AEN LG + +TV + P ++ + + + L C+ +G P W NG V +++Y++ G LI+ + + C RN GL + Y+ V P ++ + +G L C AP PSV W +D R AN G+L ++ + +GRY C A N + + +A + T+IT P + K G+++ C A ++ L W G+ + +D+ ++E L + ++ SD G Y C V E +++ + + V+G P L S T S + ++W + I Y IE+ D+ ++W+ K GN + KLS V FR+TA+ Y E V+ P++ P P G T N +V+ W + P V ++ + G + + D V+ + Y I V+ N +G GPE + + P + E +++ + + W V H YN Y + S R+ +R + V V N T +I L +SY V+A N G ASE TF T P P ++ + ++ ++W PP +TGYV+ Y + G G D + R LTDL P Y +LQA + G G+ I+ +G + +S G + EN ++++ +P+EG F I + ++ S+S + N+ + T + + + + R + KT T V +P F E WF+ + I+L+LL+ +I+C +GGKY V K+KE D P+KD Y S SDN + G +SQ SL KPL D DSL DYG D +FNEDGSFIGQY ++E D +G T
Sbjct: 31 VMEPPVITEQSPRRLVVFPTDDISLKCEASGKPEVQFRWTRDGVHFKPKEELGVTVYQSPHSGSFTITGNNSNFAQRFQGIYRCFASNKLGTAMSH-EIRLMAEGA---PKWPKETVKPVEVEEGESVVLPCNPPPSAEPLRIYWMNSKILHIKQDERVTMGQNGNLYFANVLTSDN-----HSDYICHAHFPGTRTIIQ------------------KEPIDLRVKATNSM-IDRKPRLLFPTNSSSHLVALQGQPLVLECIAEGFPTPTIKWLRPSGPMPA------DRVTYQNHNKTLQLLKVGEEDDGEYRCLAENSLGSARHAYYVTVEAAPYWLHKPQSHLYGP---GETARLDCQVQGRPQPEVTWRINGIPVEELAKDQKYRIQRGALILSNVQPSDTMVTQCEARNRHGLLLANAYIYVVQLPAKILTADNQTYMAVQGSTAYLLCKAFGAPVPSVQWLDEDGTTVLQDERFFPYAN-GTLGIRDLQANDTGRYFCLAANDQNNVTIMANLKVKDATQITQGPRSTIEKKGSRVT-FTCQASFDPS-LQPSITWRGDGRDLQELGDSDKYFIE------DGRLVIHSLDYSDQGNYSC-----VASTELDVVESRAQ---LLVVGSPGPVPRLVLSDLHLLTQSQVRVSWSPAEDHNAPIEKYDIEFEDKEMAPEKWYSLGKVPGNQTSTTLKLSPYVH-------YTFRVTAINKYGPGEPSPVSETVVTPEAA--PEKNPVDVKGEGNETTN-----MVITWKPLRWMDWNAPQVQYRVQWRPQGTRGPWQEQIVSD-PFLVVSNTSTFVPYEIKVQAVNSQGKGPEPQVTIGYSGEDYPQAIPELEGIEILNSSAVLVKWRPVDLAQVKGHLRGYNVTYWREGSQRKHSKRH--IHKDHVVVPANTTSVILSGLRPYSSYHLEVQAFNGRGSGPASEF-TFSTPEGVPGHPEALHLECQSNTSLLLRWQPPLSHNGVLTGYVLSYHPLDEGGKGQLSFNLRDPELRTHNLTDLSPHLRYRFQLQATTKEGPGEAIVREGGTMALSGISDFGNIS--ATAGENYSVVS---WVPKEGQCNF---RFHILFKALGEEKGGASLSPQYVSYNQSSYTQWDLQPDTDYEIHLFKERMFRHQMAVKTNGT----GRVRLPP-----AGFATEGWFIGFVSAIILLLLVLLILCFIKRSKGGKYSV--KDKEDTQVDSEARPMKDETFGEYRSL-ESDNEEKAFG------SSQPSLNGDIKPLGSD-------DSLADYGGSVDVQFNEDGSFIGQYSGKKEKEAAGGNDSSGAT 1247
The following BLAST results are available for this feature:
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