TCONS_00068247-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068247-protein
Unique NameTCONS_00068247-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length468

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068247-protein ID=TCONS_00068247-protein|Name=TCONS_00068247-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp
MSTVSIILEADDEFNEEESNVTLGSSQNNLSVQNVLKVVTSDEEFDTDIE
IEDTKEEYDATGKKTYFELCKRLDSTPVSYFLKHMADPEINLAYHGIGTK
GAKAVAGALVVNTVTLTVNLTENSIGFEGTRAISDMLRENCYITDLNLSS
NYLGPEGCNNVCDMLQQNLNLRKLDLSKNRFGDSVGNILAEAFKNNFKLS
HLDLSSNDLGEKAGIALGPGVNANDAMEYLNLSWNQLNRKATVEIAHGLR
ANCTLKVLDLSWNGFSDFGAVALADALKANNTLTELNICNNRIHDDGAVA
LAKALDFNNTLEILKLNGNPLTEKGALLLLNSINNKSDSAIHELHIMGVF
IQDEFLKLYKQLRENKEVIVLADFRDLTPLEKIQRFIKENKDTWLEGFHS
IDEGLVYRVPIPDFFDILQNLGLDFSFEDQIALLGKMKKDSRGRIKYRDP
LLGFQKEPPPPAAETVSA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042599XLOC_042599Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068247TCONS_00068247Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 112..139
e-value: 180.0
score: 1.2
coord: 196..223
e-value: 1.3
score: 16.5
coord: 224..251
e-value: 15.0
score: 8.9
coord: 140..167
e-value: 0.72
score: 18.1
coord: 280..307
e-value: 0.0031
score: 26.8
coord: 168..195
e-value: 0.47
score: 19.4
coord: 308..335
e-value: 1.3
score: 16.3
coord: 252..279
e-value: 2.8E-5
score: 33.5
NoneNo IPR availableGENE3D3.40.50.2000coord: 275..389
e-value: 7.3E-20
score: 71.0
coord: 213..274
e-value: 3.7E-18
score: 65.5
coord: 157..212
e-value: 7.8E-17
score: 61.1
coord: 84..156
e-value: 1.7E-15
score: 56.8
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 89..369
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 195..217
e-value: 0.061
score: 13.3
coord: 308..329
e-value: 1.1
score: 9.4
coord: 167..183
e-value: 0.11
score: 12.5
coord: 280..302
e-value: 8.7E-4
score: 19.1
coord: 252..274
e-value: 4.0E-5
score: 23.2
coord: 140..158
e-value: 0.31
score: 11.1

Blast
[Close]
BLAST of TCONS_00068247-protein vs. Swiss-Prot (Human)
Match: LR74A (Leucine-rich repeat-containing protein 74A OS=Homo sapiens GN=LRRC74A PE=2 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 1.100e-68
Identity = 135/406 (33.25%), Postives = 225/406 (55.42%), Query Frame = 0 
Query:   31 SVQNVLKVVTSDEEFDTDIEIEDTKEEYDATGKKTYFELCKRLDSTPVSYFLKHMADPEINLAYHGIGTKGAKAVAGALVVNTVTLTVNLTENSIGFEGTRAISDMLRENCYITDLNLSSNYLGPEGCNNVCDMLQQNLN-LRKLDLSKNRFGDSVGNILAEAFKNNFKLSHLDLSSNDLGEKAGIALGPGVNANDAMEYLNLSWNQLNRKATVEIAHGLRANCTLKVLDLSWNGFSDFGAVALADALKANNTLTELNICNNRIHDDGAVALAKALDFNNTLEILKLNGNPLTEKGALLLLNSINNKSDSAIHELHIMGVFIQDEFLK-------LYKQ----------LRENKEVIVLADFRDLTPLEKIQRFIKENKDTWLEGFHSIDEGLVYRVPIPDFFDIL 418
            S   V KV  + E  +TD+EIED ++ +    K+ Y E CK +   PVSYF+++M +  +NL +HG+G +G KA+A ALV N     + L +N I  EG  ++ +ML+EN Y+ ++N+S+N+LG EG   + D  ++N + +  L+LS N F +    +L +A   N+++  LDLS N   +  G  LG  +  N  +  L+LSWN  + +  V + +GLR N TL  LDLS NGF +  A+AL + L+ N  L  L+I  N I ++GA  ++K L+ N +L +LKL  NP+   GA+LL+ +I     S + EL I  V + ++F+K       ++ Q          L   K + +L +     P++ IQ +  ++K T ++ F S++     ++ + +F  ++
Sbjct:   51 SPPTVEKVKPARENSETDLEIEDDEKFFTTGQKELYLEACKLMGVVPVSYFIRNMEESYVNLNHHGLGPRGTKAIAIALVSNMAVTKLELEDNCIMEEGVLSLVEMLQENYYLQEMNISNNHLGLEGARIISDFFERNSSSIWSLELSGNDFKEDSAALLCQALSTNYQIKKLDLSHNQFSDVGGEHLGQMLAINVGLTSLDLSWNNFHTRGAVALCNGLRGNVTLTKLDLSMNGFGNEVALALGEVLRLNRCLVYLDIGGNDIGNEGASKISKGLESNESLRVLKLFLNPINMDGAILLILAIKRNPKSRMEELDISNVLVSEQFMKTLDGVYAVHPQLDVVFKAVQGLSPKKTIFLLTN-----PMKLIQSYADQHKITIVDFFKSLNPTGTMKMSVDEFQKVM 451
The following BLAST results are available for this feature:
BLAST of TCONS_00068247-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LR74A1.100e-6833.25Leucine-rich repeat-containing protein 74A OS=Homo... [more]
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