TCONS_00067975-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00067975-protein
Unique Name	TCONS_00067975-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1486

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00067975-protein ID=TCONS_00067975-protein|Name=TCONS_00067975-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1486bp
RSTGNIQNDVPFEALDKIALKRKSDGRGDKLLYGDFIWNGFVVNDENLNL
VNLTECSKSTGDSITKNEYLVNLYQDRRHSLYEGIFSSPTATTDLDWSLL
KRSFVYEKAHVLDIQMGSVDQDDIIALTKHVRSFSESLNSLRNTFNDSLT
NGIYNEKGCHDLAHNRLSEVLGMLKKILSKYPHLHSQDILDAAKNIIRKI
RDHNYSIGEQGPEEYYAAIDQLALSFSSSVSEFVLGDKDSPHSPSAGLEQ
EDDDHFHHDEEYDPKQYDEDFDKNESEDSLDHNNSYEVLHQNLQRLGSSL
DYRSISHDNELTTPSSPTLSPKDLSIQRTDELDKTLRSIEDSVELTLTRT
KVWTKYAKDILNYLEKRSHFEADCSKQIAKLAQTTRSNIVEESFLPFQSI
FVTALDNDIQFSNNFGKNCENPLKGIIDKLAQRQRDHDAKRSKLKGKWKN
ELKRVAESRENLRNAKAQYMRKQKELEKFNKLQQEGKDEKGFSIGKKKGQ
EDFIKSADDSEHYYKQCVNESNRRQQELERMKSESLIELRQLVYQCDMTM
KQVTIAYFQMMHQLLNPLPVQYKTLAESCKNYEEGQQFADFVKLQQSTSN
QAMCPTYQFEPYRGEGVTNNSLRHQTDGNVLAISSDDFHSNRRMSINSES
EKPKQAWAGSLPRNKGSATDDTDSQSSRSLPNSREASPTSARKLTETYSD
DESHTRGGQKNQKRSTAAKSHKFKKLRTASKCKECESLVYFNGFECEKCG
IICHKKCLEKLAIQCGNKRLPRKMTTFGVDFHQHLEATKRKDIPYIMEKC
IDTLDEIGLGAKGLYRVSGVKSKVEKLCQQFETGGHLIDLTSTHQQPQLI
ASVLKLYLRQLPEPLLTFKLYQPFIDLAKESGPIKLSDLDELDDQHASQY
EEVIKKVHDIVKRLPSANFYTAGKLIRHLKRVANHAHENQMSPSNLAIVF
GPTLLRPEGDANSLSAVMDMSLQTRAVELLILNDRIFVDETNIIEVTMQE
KKFNRPSMRKKRQPVPETVQEVPAEHKRDDSNIASEFSQELLHIKFDSVT
NTATVKQTPQLPGQPDNSGDYDNIPGDIETDIAGDLPVIPNVNGNANYNT
QTSTSLSDTTDYESAHSRLSSIESLLDDGSVNFNSQSPVELPDASSPVSP
TSEEIDDDVWMNQFGKDNKRRSPDSGLEGSPATNVPVTLPLKKKPSSPSS
RLETTTYSFSIGSTELTPEDANTDQPGDLNDLSPSDSLDGLEPFVKRDSK
ERQPVRGKHLKAVNVKATINVSPEQPSPKSSPQVPQKAVVESTRSVDSGI
NDVNDLHQSGVSVENNRHPSTASAESEKDGSPGLTVNITQAQKLQNITEK
SENSGGGADQTTQKSPTKQGPMTLPKPKKTLDKKSWTADLIKSKTQKIPE
QPQPGSLNERLLQQGSVKRPSATAEDIPPVSPDTQESSDAVFPPRSASVG
HRSSVRDIRNRFQNNLINNSSPGDDLHESTETEKFV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_042454	XLOC_042454	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00067975	TCONS_00067975	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000198	RhoGAP_dom
IPR002219	PE/DAG-bd
IPR031160	F_BAR
IPR008936	Rho_GTPase_activation_prot
IPR027267	AH/BAR-dom

Vocabulary: **Biological Process**
Term	Definition
GO:0007165	signal transduction
GO:0035556	intracellular signal transduction

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035556	intracellular signal transduction
biological_process	GO:0007165	signal transduction

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 445..482
None	No IPR available	COILS	Coil	Coil	coord: 514..534
None	No IPR available	GENE3D	1.10.555.10		coord: 706..1001 e-value: 2.5E-68 score: 229.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1053..1088
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 235..280
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1093..1112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 644..722
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1130..1486
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1005..1028
None	No IPR available	SUPERFAMILY	57889	Cysteine-rich domain	coord: 713..768
IPR000198	Rho GTPase-activating protein domain	SMART	SM00324	RhoGAP_3	coord: 791..985 e-value: 1.7E-56 score: 203.7
IPR000198	Rho GTPase-activating protein domain	PFAM	PF00620	RhoGAP	coord: 794..959 e-value: 5.5E-42 score: 143.1
IPR000198	Rho GTPase-activating protein domain	PROSITE	PS50238	RHOGAP	coord: 779..988 score: 46.028
IPR002219	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	SMART	SM00109	c1_12	coord: 719..765 e-value: 6.0E-8 score: 42.4
IPR002219	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	PFAM	PF00130	C1_1	coord: 721..767 e-value: 7.0E-7 score: 28.9
IPR002219	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	PROSITE	PS00479	ZF_DAG_PE_1	coord: 721..765
IPR002219	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	PROSITE	PS50081	ZF_DAG_PE_2	coord: 720..765 score: 11.783
IPR002219	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	CDD	cd00029	C1	coord: 721..765 e-value: 6.51982E-7 score: 47.4868
IPR031160	F-BAR domain	PROSITE	PS51741	F_BAR	coord: 330..587 score: 28.132
IPR008936	Rho GTPase activation protein	SUPERFAMILY	48350	GTPase activation domain, GAP	coord: 776..983
IPR027267	Arfaptin homology (AH) domain/BAR domain	SUPERFAMILY	103657	BAR/IMD domain-like	coord: 340..612

Blast

[Close]

BLAST of TCONS_00067975-protein vs. Swiss-Prot (Human)
Match: RHG29 (Rho GTPase-activating protein 29 OS=Homo sapiens GN=ARHGAP29 PE=1 SV=2)

HSP 1 Score: 384.03 bits (985), Expect = 8.241e-112
Identity = 244/717 (34.03%), Postives = 377/717 (52.58%), Query Frame = 0

Query:  331 ELDKTLRSIEDSVELTLTRTKVWTKYAKDILNYLEKRSHFEADCSKQIAKLAQTTRSNIVEESFLPFQSIFVTALDNDIQFSNNFGKNCENPLKG--IIDKLAQRQRDHDAKRSKLKGKWKNELKRVAESRENLRNAKAQYMRKQKELEKFNKLQQEGKDEKGFSIG------------KKKGQEDFIKSADDSEHYYKQCVNESNRRQQELERMKSESLIELRQLVYQCDMTMKQVTIAYFQMMHQLLNPLPVQYKTLAESCKNYEEGQQFADFVKLQQSTSNQ----------------AMCPTYQFEPYRGEGVTNNSLRHQTDGNVLAISSDDF----------------HSNRRMSINSESEKPKQAWAGSLPRNKGSAT-DDTDSQSSRSLPNSREASPTSARKLTETYSDDESHTRGGQKNQKRSTAAKSHKFKKLRTASKCKECESLVYFNGFECEKCGIICHKKCLEKLAIQCGNKRLPRKMTTFGVDFHQHLEATKRKD-IPYIMEKCIDTLDEIGLGAKGLYRVSGVKSKVEKLCQQFETGGHLIDLT--STHQQPQLIASVLKLYLRQLPEPLLTFKLYQPFIDLAKESGPI---KLSDLDELDDQH----ASQYEEVIKKVHDIVKRLPSANFYTAGKLIRHLKRVANHAHENQMSPSNLAIVFGPTLLRPEGDAN--SLSAVMDMSLQTRAVELLI-LNDRIF 987
            ELD  L    DS+EL L+  K W+KY K+I++++EK+ + E + ++ + KLA+ TR+NI  + F+P QS+F  AL NDI+ S++  +     L+    +  L  R+ + + +R ++K  WK E  ++ E+   L+ AK   M++Q E EK        ++E   S G            K++ +E+ ++  +++   YK CV     R+ +LE  K E L +LR LV+QCD+T+K VT+  F M H     L    ++L +S K Y+ GQ++++FVK   ST  +                   P    E       ++N +      N   I+   F                 S+   S++SES  P   +   LPR   S T    D    R  P+  E  P S                G  K    S AA +HKF+KLR+ +KC++CE +V F G ECE+C ++CH+KCLE L I CG+++LP K+  FG +F Q   A K  D IP+I++ C   ++   L  +G+YRV G K K EKLCQ  E G HL+D++  S+H     I  VLKLYLRQLPEP + F+LY+ FIDLAKE   +   + +  + L+D+       +   ++ K  D++++LP++NF +   LI HLKRV +HA EN+M+  NL ++FGP+L+RP       ++S++ + S Q R VE LI  + +IF
Sbjct:  193 ELDNVLLKNTDSIELALSYAKTWSKYTKNIVSWVEKKLNLELESTRNMVKLAEATRTNIGIQEFMPLQSLFTNALLNDIE-SSHLLQQTIAALQANKFVQPLLGRKNEMEKQRKEIKELWKQEQNKMLEAENALKKAKLLCMQRQDEYEKAKSSMFRAEEEHLSSSGGLAKNLNKQLEKKRRLEEEALQKVEEANELYKVCVTNVEERRNDLENTKREILAQLRTLVFQCDLTLKAVTVNLFHMQHLQAASLADSLQSLCDSAKLYDPGQEYSEFVKATNSTEEEKVDGNVNKHLNSSQPSGFGPANSLEDVVRLPDSSNKIEEDRCSNSADITGPSFIRSWTFGMFSDSESTGGSSESRSLDSESISPGD-FHRKLPRTPSSGTMSSADDLDEREPPSPSETGPNSL---------------GTFKKTLMSKAALTHKFRKLRSPTKCRDCEGIVVFQGVECEECLLVCHRKCLENLVIICGHQKLPGKIHLFGAEFTQ--VAKKEPDGIPFILKICASEIENRALCLQGIYRVCGNKIKTEKLCQALENGMHLVDISEFSSHD----ICDVLKLYLRQLPEPFILFRLYKEFIDLAKEIQHVNEEQETKKNSLEDKKWPNMCIEINRILLKSKDLLRQLPASNFNSLHFLIVHLKRVVDHAEENKMNSKNLGVIFGPSLIRPRPTTAPITISSLAEYSNQARLVEFLITYSQKIF 886

The following BLAST results are available for this feature:

BLAST of TCONS_00067975-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00067975-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RHG29	8.241e-112	34.03	Rho GTPase-activating protein 29 OS=Homo sapiens G...	[more]

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TCONS_00067975-protein (polypeptide) - C. hemisphaerica