TCONS_00067572-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00067572-protein
Unique NameTCONS_00067572-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length589

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00067572-protein ID=TCONS_00067572-protein|Name=TCONS_00067572-protein|organism=Clytia hemisphaerica|type=polypeptide|length=589bp
MAFGSHVYNLLFDYNQKNLLEGDNRDQLSLSSSSSSPSASAVSKEIHMSF
VSAATPFKPSGKNDHSFSDLEAVRIQATCISKAHSAGDRKIMTVDPNITS
YASLYLLLKKAFSLEQDFDIVYQLPRNAKSDRPDVFLSLTSDWDLDAAFH
TATRPFLQLKVQPFEKDVIDGWDIVQPIHTPQVKDIKSRQAHIPLAVTLK
YDITKTIGKVFDVFATEKPSLFTNTEWMAFFDATGRMSSMKDLKTSIFVK
NLEPDVRADAWPHLLGVFPVDLTFEERTRFLFMKTQVYKHLKENWMAKNP
REIKGLTHMIQKDVLRTDRTHPFFNVKEDHPNLVSLFNILITFAFNNPDI
SYCQGMSDLVAPLLVVLNDEILAYLCFCKVMERLKNNFLLKGTALMEKFT
QLSELLKKADKPLHDHIQTLDGGHFYFCYRMLLLELKREFPFEDAIHVME
SIWSSTPHHTEDEDCEMSFYEELLQNHLNHGNTSIDESIKFSGLPPPKDL
NDGSPFPLFLCLAIFILNREHLLQLDEYTMLAMHFDKLSRKLDATHVKEK
AKSLFFKYLKDSIEENRASSLLKECLENTHGTSSTAAQC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042199XLOC_042199Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00067572TCONS_00067572Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000195Rab-GTPase-TBC_dom
IPR000270PB1_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000195Rab-GTPase-TBC domainSMARTSM00164tbc_4coord: 249..481
e-value: 2.0E-32
score: 123.7
IPR000195Rab-GTPase-TBC domainPFAMPF00566RabGAP-TBCcoord: 255..454
e-value: 1.1E-38
score: 133.0
IPR000195Rab-GTPase-TBC domainPROSITEPS50086TBC_RABGAPcoord: 251..456
score: 30.456
IPR000195Rab-GTPase-TBC domainSUPERFAMILY47923Ypt/Rab-GAP domain of gyp1pcoord: 225..416
IPR000195Rab-GTPase-TBC domainSUPERFAMILY47923Ypt/Rab-GAP domain of gyp1pcoord: 393..558
IPR000270PB1 domainSMARTSM00666PB1_newcoord: 78..164
e-value: 1.2E-6
score: 38.0
NoneNo IPR availableGENE3D1.10.8.270coord: 268..382
e-value: 1.5E-24
score: 85.8
NoneNo IPR availableGENE3D3.10.20.90coord: 74..163
e-value: 5.2E-7
score: 29.3

Blast
[Close]
BLAST of TCONS_00067572-protein vs. Swiss-Prot (Human)
Match: TBC25 (TBC1 domain family member 25 OS=Homo sapiens GN=TBC1D25 PE=1 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 1.109e-78
Identity = 148/398 (37.19%), Postives = 231/398 (58.04%), Query Frame = 0 
Query:   90 KIMTVDPNITSYASLYLLLKKAFSL--EQDFDIVYQLPRNAKSDRPDVFLSLTSDWDLDAAFHTATRPFLQLKV--QPFEKD-VIDGWDIVQP--IHTPQVKDIKSRQ----AHIPLAVTLKYDITKTIGKVFDVFATE--------KPSLFTNTEWMAFFDATGRMSSMKDLKTSIFVKNLEPDVRADAWPHLLGVFPVDLTFEERTRFLFMKTQVYKHLKENWMAK-NPREIKGLTHMIQKDVLRTDRTHPFFNVKEDHPNLVSLFNILITFAFNNPDISYCQGMSDLVAPLLVVLNDEILAYLCFCKVMERLKNNFLLKGTALMEKFTQLSELLKKADKPLHDHIQTLDGGHFYFCYRMLLLELKREFPFEDAIHVMESIWSSTPHHTEDEDCEM 467
            +   VDP ITS   L  +L +AF L  +++F I Y L R+      +V+LSL SDWDL  AF TA++P+LQL+V  +P E   +++ WDI+ P  +    V   + R     A +P   ++   + +T+ KV  V +          KP L ++ E+  + +  G++S  ++L+  I+   +EP +R   W +LL V+P  LT  ER  ++  K++ Y+ LK  W  + NP +++ +   + KDVLRTDR HP++   ED P+L +L ++L T+A  +P +SYCQGMSDL +P+L V++ E  A++CFC +M+RL  NF   G A+  KF  L  LL+ AD   + ++Q       +FCYR LLLELKREF F+DA+ ++E  WSS P    + + E+
Sbjct:   52 RSFAVDPQITSLDVLQHILIRAFDLSGKKNFGISY-LGRDRLGQ--EVYLSLLSDWDLSTAFATASKPYLQLRVDIRPSEDSPLLEDWDIISPKDVIGSDVLLAEKRSSLTTAALPFTQSILTQVGRTLSKVQQVLSWSYGEDVKPFKPPL-SDAEFHTYLNHEGQLSRPEELRLRIYHGGVEPSLRKVVWRYLLNVYPDGLTGRERMDYMKRKSREYEQLKSEWAQRANPEDLEFIRSTVLKDVLRTDRAHPYYAGPEDGPHLRALHDLLTTYAVTHPQVSYCQGMSDLASPILAVMDHEGHAFVCFCGIMKRLAANFHPDGRAMATKFAHLKLLLRHADPDFYQYLQEAGADDLFFCYRWLLLELKREFAFDDALRMLEVTWSSLPPDPPEHEVEL 445
The following BLAST results are available for this feature:
BLAST of TCONS_00067572-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBC251.109e-7837.19TBC1 domain family member 25 OS=Homo sapiens GN=TB... [more]
back to top