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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00067347-protein ID=TCONS_00067347-protein|Name=TCONS_00067347-protein|organism=Clytia hemisphaerica|type=polypeptide|length=577bp
MRSDLHNLPNDSSSGSSSPHSNTSHEEPLEMDQASNMLHQKVVYNFSIPE
FINHERIDRDDRERSRAEVRRKRNRLARHQQQHPPQDQRDSEEQSEDREP
SERIEIQDSPVIVHATKKRRRAAAAVEEDDGDDDCHRRRQHVPVIDLTGD
HDSPHSDTEGRTNSRSSLYRPYRDRHGFGQLFSDFERSHYLSRDRHERLN
RFFYRSPSMQRLHRMQQLRRRHETHRHSHRLAGEDILFPERSVRENERTT
NEEPHEGTNADDSVLIVNEVRGTTDLSRPTLEDDEPTFPPNLSSRPDPMQ
PPHGPHSSLDLIEDRLRILRERRQMHEAMTRVNPIDSVREREEIAQPSSG
VHERMGLRNRNRPTNNNRESNEGTANESRANEEEQRPRENLRQSERNMTA
RMTASDNLNQEAADNGGEVEFIGEWNVRNSPASRQRHIPPSLLPFQLGHP
LHLPFASSEHRHHFLRFLPTVTPPRLHHLYQENYEALLNLADTLGPGKPR
GLDKTEIERIPSFRFSSNTAKETNVKCVVCISEYTNREKLRRLPCSHDFH
AKCIDKWLKSNKTCPVCRDEVKVTSAE Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 62..82 |
| None | No IPR available | COILS | Coil | Coil | coord: 309..329 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 59..171 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 336..396 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 241..309 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..36 |
| None | No IPR available | SUPERFAMILY | 57850 | RING/U-box | coord: 526..573 |
| IPR001841 | Zinc finger, RING-type | SMART | SM00184 | ring_2 | coord: 527..567
e-value: 1.6E-7
score: 41.0 |
| IPR001841 | Zinc finger, RING-type | PFAM | PF13639 | zf-RING_2 | coord: 526..568
e-value: 1.1E-13
score: 51.1 |
| IPR001841 | Zinc finger, RING-type | PROSITE | PS50089 | ZF_RING_2 | coord: 527..568
score: 13.168 |
| IPR001841 | Zinc finger, RING-type | CDD | cd00162 | RING | coord: 526..571
e-value: 7.2827E-13
score: 62.8484 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 502..576
e-value: 1.7E-20
score: 71.7 |
Blast
BLAST of TCONS_00067347-protein vs. Swiss-Prot (Human)
Match: RNF38 (E3 ubiquitin-protein ligase RNF38 OS=Homo sapiens GN=RNF38 PE=1 SV=4) HSP 1 Score: 128.642 bits (322), Expect = 9.548e-32 Identity = 52/90 (57.78%), Postives = 71/90 (78.89%), Query Frame = 0 Query: 482 ENYEALLNLADTLGPGKPRGLDKTEIERIPSFRFSSNTAKETNVKCVVCISEYTNREKLRRLPCSHDFHAKCIDKWLKSNKTCPVCRDEV 571
ENYEALLNLA+ LG KPRGL K +IE++PS+RF+ N + CVVC+ ++ +R+ LR LPC+H+FHAKC+DKWLK+N+TCP+CR +
Sbjct: 418 ENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADA 507
The following BLAST results are available for this feature:
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