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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00067246-protein ID=TCONS_00067246-protein|Name=TCONS_00067246-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1496bp
MMSYHGRGGSHGSRRSPPRGRSPPRRRRSPERENHYCMFCKTQLTSRRAY
HEHKESPVHKQKEIVITKAQTDGLHYCYTCEKIFPSKVELDAHCLMSRHQ
PLYRVDGLAPQQEKKEPEKEKEQPVERERDKRRAEDEKERQKIMLKLNEL
KEPAVDKRKRHFCQLCNQDCLTEGNYRSHLDSWRHRAEVDKKKDHEMKKK
LEEENERKFRELDDEQTPSNDANGSASSIQVPSNLTSGSRYWCEICSVGA
NDELAYIAHVRGRKHLRAISQLKRPYKCYVCRLNYTVERDFNTHLESKAH
IEKAFRRSASQNSKQSSSVKSKESSKKHIDARKRIDSNREKHNDDGERKV
EIVKSPAVDTGDLREKLQGKTNIVITKPNNTKADEGPNQYGPKLPTDKKD
SQTIDKRAKEMEFQGKFRKIVREYGNNMKGLKERLTKDREQDIKTYQQFE
TTYSKLCGEEDYVRENLRVLKDGDPRKEEYMRDMMRIQSDMREVRQELEI
REMMIIKREELFRTKFQDIDSTVVLTPQPKSDDENNKGKTQDKSNIDTNK
PKQGESQEEADLRIQLERERLLKRLGPELSSLDPVLRDKLMSAIMDEKKE
KSAAASNKSMSDEKKRQMAKLSEREKELQKELAALKSNTSSGGTEKKTKS
LVPDYDDVDDNKRKKRDEESSDSSDSSSDSSDDDDDPKTRKKRRRSSPSR
SSRRSRRSSNERSRRSKRSRRTRSRSRSRDRDGRRKKTSSRRSTERSSKS
NKKPEKKLVKLVIKGKEQSKPQSINVLDSSESEIEKTPQKQQEPSVAIPV
FSGGASQAAAQQITHQPPKNVNKREQFSLWKNAPNPPPAPAPAKETPKED
VWDIAFSGGSKPEEENELDDPLSRLFNSNSDSPKTLPDQILNILRTVAPA
IQKVASNQPPQQYQPLSVPQRNPPVATPQQQFPVPIPQHKEPPPKEFPSY
GKPEYFKSTATVTAPITTPPEQSSGGRIRSILKKMKDPQPKTPFHSSTIS
ALASSQSETVIPGLDPIKAKSPEKPSPATESLPSRIVEPPVTSVPQLYPP
ATTSRDKSPPRLADRYDRYPETRPPPDPYAPPGDRYPPPAIATPERDRYA
PAPAPVNPVSGAYPPPPERPAYDPRYHDKPPPTSSSYERDVENYRSTEQD
QQRPPRDPYAPPAARDLPPPPAPRVNEPLVAPVKQPGESEDRYYIRFEKY
YEEKRRREAELRRDHPPRRYEDDRRLPPPPHPDYPGGGRPPAYPERRVDD
RYDDRYHRRGPYDESPRERLPPPPHNGADPRYRDPPPPVERDPRDYPPPP
ERRGGFGQAPPPPRPIDDRKRPGYPEETRRPDDRRPPYDDRRPLDDPRRP
PEQMRRPPSDDRRPPVDDRRPLHNDPRRPPPIDGRHLPPLDGRRPPDGRR
PPEDVRRPRDDGRGPPPRDEGRRPYPGDGRREDSHRPPPRGDMNKPPPQG
LPDGKGPGGPPPKNGDPRSHPDDRGRRPPLVPPQGGHYDDGRYRPY Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003604 | Matrin/U1-like-C_Znf_C2H2 |
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 611..638 |
| None | No IPR available | COILS | Coil | Coil | coord: 421..441 |
| None | No IPR available | COILS | Coil | Coil | coord: 477..497 |
| None | No IPR available | PFAM | PF12874 | zf-met | coord: 241..265
e-value: 1.9E-5
score: 24.8 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 74..191
e-value: 0.25
score: 11.3
coord: 241..306
e-value: 0.0041
score: 17.0 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 377..402 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 305..350 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 107..139 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 598..885 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 523..560 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..35 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 189..231 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 905..1496 |
| IPR003604 | Matrin/U1-C-like, C2H2-type zinc finger | SMART | SM00451 | ZnF_U1_5 | coord: 158..192
e-value: 0.65
score: 13.7
coord: 72..108
e-value: 33.0
score: 0.2
coord: 273..307
e-value: 0.46
score: 14.9
coord: 32..66
e-value: 1.1
score: 12.0
coord: 238..272
e-value: 6.9E-6
score: 35.6 |
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 276..300
e-value: 19.0
score: 10.7
coord: 241..265
e-value: 20.0
score: 10.6
coord: 35..59
e-value: 16.0
score: 11.5
coord: 161..185
e-value: 8.3
score: 14.0
coord: 75..99
e-value: 14.0
score: 12.1 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 77..99 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 278..300 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 37..59 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 231..275 |
Blast
The following BLAST results are available for this feature:
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