TCONS_00067216-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00067216-protein
Unique NameTCONS_00067216-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length239

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00067216-protein ID=TCONS_00067216-protein|Name=TCONS_00067216-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
TSNQGIFGCLKAEKYRSVKKNTKMSDEKWLEDSGNLEQKEEEPFPYAEGE
HEEMPDETVEEDPEIEAIKARVKEMEEEAAKLKEMQKEAEDSLMSPSSHG
ASPAASSEAKGDIDSRSVYVGNVDYSATATELEQHFHGCGSVNRVTILCD
KFSGHPKGFAFVEFADKESVENSVTLSDTLFKGRQIKVTPKRTNIPGIST
TNRGFRARGRGRGRGGFGYSPRRGRGAYRSRRASHFSPY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041991XLOC_041991Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00067216TCONS_00067216Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 65..95
NoneNo IPR availableGENE3D3.30.70.330coord: 12..204
e-value: 2.5E-27
score: 95.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 193..239
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 117..189
e-value: 1.0E-20
score: 84.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 118..187
e-value: 2.3E-16
score: 59.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 116..193
score: 16.756
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 104..221

Blast
[Close]
BLAST of TCONS_00067216-protein vs. Swiss-Prot (Human)
Match: PABP2 (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 200.29 bits (508), Expect = 1.642e-63
Identity = 121/198 (61.11%), Postives = 139/198 (70.20%), Query Frame = 0 
Query:   55 PDETVEEDPEIEAIKARVKEMEEEAAKLKEMQKEAEDSL-MSPSSHGASPAASS-EAKGDIDSRSVYVGNVDYSATATELEQHFHGCGSVNRVTILCDKFSGHPKGFAFVEFADKESVENSVTLSDTLFKGRQIKVTPKRTNIPGISTTNRGF-RARGRGRGRG----------GFGYSPRRGRGAYRSRRASHFSPY 239
            P +   EDPE+EAIKARV+EMEEEA KLKE+Q E E  + MSP    A P   S E K + D+RS+YVGNVDY ATA ELE HFHGCGSVNRVTILCDKFSGHPKGFA++EF+DKESV  S+ L ++LF+GRQIKV PKRTN PGISTT+RGF RAR R R             GF   PR      R+R  S +SPY
Sbjct:  109 PGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYRGRARATSWYSPY 306
The following BLAST results are available for this feature:
BLAST of TCONS_00067216-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PABP21.642e-6361.11Polyadenylate-binding protein 2 OS=Homo sapiens GN... [more]
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