Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00067216-protein ID=TCONS_00067216-protein|Name=TCONS_00067216-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
Term Definition
IPR000504 RRM_dom
Vocabulary: Molecular Function
Term Definition
GO:0003676 nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0003676 nucleic acid binding
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
20 40 60 80 100 120 140 160 180 200 220 Score = Expect = 2.5E-27 / Score = 95.1 Score = Score = Score = Expect = 1.0E-20 / Score = 84.8 Expect = 2.3E-16 / Score = 59.3 Score = 16.756 Score = Sequence Coil G3DSA:3.30.70.330 mobidb-lite mobidb-lite mobidb-lite SM00360 PF00076 PS50102 SSF54928
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 65..95 None No IPR available GENE3D 3.30.70.330 coord: 12..204 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 74..111 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 19..62 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 193..239 IPR000504 RNA recognition motif domain SMART SM00360 rrm1_1 coord: 117..189 IPR000504 RNA recognition motif domain PFAM PF00076 RRM_1 coord: 118..187 IPR000504 RNA recognition motif domain PROSITE PS50102 RRM coord: 116..193 IPR000504 RNA recognition motif domain SUPERFAMILY 54928 RNA-binding domain, RBD coord: 104..221
Blast
BLAST of TCONS_00067216-protein vs. Swiss-Prot (Human)
Match:
PABP2 (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3)
HSP 1 Score: 200.29 bits (508), Expect = 1.642e-63
Identity = 121/198 (61.11%), Postives = 139/198 (70.20%), Query Frame = 0
Query: 55 PDETVEEDPEIEAIKARVKEMEEEAAKLKEMQKEAEDSL-MSPSSHGASPAASS-EAKGDIDSRSVYVGNVDYSATATELEQHFHGCGSVNRVTILCDKFSGHPKGFAFVEFADKESVENSVTLSDTLFKGRQIKVTPKRTNIPGISTTNRGF-RARGRGRGRG----------GFGYSPRRGRGAYRSRRASHFSPY 239
P + EDPE+EAIKARV+EMEEEA KLKE+Q E E + MSP A P S E K + D+RS+YVGNVDY ATA ELE HFHGCGSVNRVTILCDKFSGHPKGFA++EF+DKESV S+ L ++LF+GRQIKV PKRTN PGISTT+RGF RAR R R GF PR R+R S +SPY
Sbjct: 109 PGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYRGRARATSWYSPY 306
The following BLAST results are available for this feature:
BLAST of TCONS_00067216-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
T S N Q G I F G C L K A E K Y R S V K K N T K M S D E K W L E D S G N L E Q K E E E P F P Y A E G E H E E M P D E T V E E D P E I E A I K A R V K E M E E E A A K L K E M Q K E A E D S L M S P S S H G A S P A A S S E A K G D I D S R S V Y V G N V D Y S A T A T E L E Q H F H G C G S V N R V T I L C D K F S G H P K G F A F V E F A D K E S V E N S V T L S D T L F K G R Q I K V T P K R T N I P G I S T T N R G F R A R G R G R G R G G F G Y S P R R G R G A Y R S R R A S H F S P Y 20 40 60 80 100 120 140 160 180 200 220 Expect = 1.64e-63 / Id = 61.11 Sequence PABP2
Match Name E-value Identity Description
PABP2 1.642e-63 61.11 Polyadenylate-binding protein 2 OS=Homo sapiens GN... [more]
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