TCONS_00067184-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00067184-protein
Unique Name	TCONS_00067184-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	442

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00067184-protein ID=TCONS_00067184-protein|Name=TCONS_00067184-protein|organism=Clytia hemisphaerica|type=polypeptide|length=442bp
MGHFINIFILLILFIAMVHCKGDQENRYINKDILSPFLLNKVETRRKNRL
SHQHYEIVNTDTRKNSSQLVQRFTKKLTNNTVYGHRILISNGYKVLSVLE
PKEDGGCSKHQTATVYESSKQRECLVAINAGFFNEDTGQCFGNIISDGEL
INQFRGLKSVNFGIRDDGSIVTGYLKETDFKEMRHPLLQLVTGVGWILRR
GENYLSTSKQHEQCNLDNLQNFFEVRTARTFLGHDSKGNVHIVQVEGKTG
LYGISLYESVELLKSFNLVNVINLNGAGSSTLVINDTVVNYPGNTCYNDE
GRSNLCDTKVSTILCVHKPDSCIPGQSCSGRGTCFKGKCKCHNDWSGKDC
EFNGKMLEKCCWRNYNIVIFMSALIGASVVINVVLCDLFMLYRFRSKDMT
QPRRRPKDRLRTYLKETSIISDDESTDILTSAENLLATTSSL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041973	XLOC_041973	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00067184	TCONS_00067184	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR018711	NAGPA
IPR013032	EGF-like_CS

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.10.25.10		coord: 306..353 e-value: 5.3E-7 score: 29.3
None	No IPR available	SUPERFAMILY	57196	EGF/Laminin	coord: 325..352
IPR018711	Phosphodiester glycosidase	PFAM	PF09992	NAGPA	coord: 123..316 e-value: 9.3E-26 score: 90.9
IPR013032	EGF-like, conserved site	PROSITE	PS00022	EGF_1	coord: 339..350

Blast

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BLAST of TCONS_00067184-protein vs. Swiss-Prot (Human)
Match: NAGPA (N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase OS=Homo sapiens GN=NAGPA PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 5.453e-64
Identity = 111/287 (38.68%), Postives = 168/287 (58.54%), Query Frame = 0

Query:   70 VQRFTKKLTNNTVYGHRILISNGYKVLSVLEPKEDGGCSKHQTATVYESSKQRECLVAINAGFFNEDTGQCFGNIISDGELINQFRGLKSVNFGIRDDGSIVTGYLKETDFKEMRHPLLQLVTGVGWILRRGENYLSTSKQHEQCN----LDNLQNFFEVRTARTFLGHDSKGNVHIVQVEGKTGLYGISLYESVELLKSFNLVNVINLNGAGSSTLVINDTVVNYPGNTCYNDEGRSNLCDTKVSTILCVHKPDSCIPGQSCSGRGTCFKGKCKCHND-WSGKDCE 351
            V+ F     +  V GH        +  SVLEP   GGC+  + ATV E+++  +C VA N GFF  ++G+C GN++SD   ++   GL++  FGIR DG++VTGYL E +  +  +P +QL++GV W++R G  Y++ S Q  +C+      +   F  V +ART +GHD KG + +   +G+T   GI+L+E  E L   ++VN INL+G GS+T V+N T+ +YP + C ++  R   C  +VST++CVH+P  C P   C G GTC  G C+C    W G  C+
Sbjct:   78 VRTFVSHFRDRAVAGHLTRAVEPLRTFSVLEPGGPGGCAARRRATVEETARAADCRVAQNGGFFRMNSGECLGNVVSDERRVSSSGGLQNAQFGIRRDGTLVTGYLSEEEVLDTENPFVQLLSGVVWLIRNGSIYINES-QATECDETQETGSFSKFVNVISARTAIGHDRKGQLVLFHADGQTEQRGINLWEMAEFLLKQDVVNAINLDGGGSATFVLNGTLASYPSDHCQDNMWR---CPRQVSTVVCVHEP-RCQP-PDCHGHGTCVDGHCQCTGHFWRGPGCD 358

The following BLAST results are available for this feature:

BLAST of TCONS_00067184-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00067184-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
NAGPA	5.453e-64	38.68	N-acetylglucosamine-1-phosphodiester alpha-N-acety...	[more]

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TCONS_00067184-protein (polypeptide) - C. hemisphaerica

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