TCONS_00067170-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00067170-protein
Unique NameTCONS_00067170-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length178

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00067170-protein ID=TCONS_00067170-protein|Name=TCONS_00067170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
VAVEKTPTKKYARSVDSSKLNCCRLCGEEKTRYQKVLSNVGTKKNLVSKI
EQCCGILIKCDDELPSTICTACEAFVEKVIQFKTKCQRVNDEMNLTTTTK
RCLKVTDVVLSPSRRPVPNKKLKFEAKTNIDIDSEDAFAAKLIELDSIDP
CKIASLIFLSCTNIFSQIKRLIIQSIQK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041967XLOC_041967Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00067170TCONS_00067170Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012934Znf_AD
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
ZOOM
x 1
POSITION
0
VAVEKTPTKKYARSVDSSKLNCCRLCGEEKTRYQKVLSNVGTKKNLVSKIEQCCGILIKCDDELPSTICTACEAFVEKVIQFKTKCQRVNDEMNLTTTTKRCLKVTDVVLSPSRRPVPNKKLKFEAKTNIDIDSEDAFAAKLIELDSIDPCKIASLIFLSCTNIFSQIKRLIIQSIQK20406080100120140160Expect = 0.0014 / Score = 27.5Expect = 1.4E-11 / Score = 44.4Score = SequenceSM00868PF07776SSF57716
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012934Zinc finger, AD-typeSMARTSM00868zf_AD_2coord: 22..96
e-value: 0.0014
score: 27.5
IPR012934Zinc finger, AD-typePFAMPF07776zf-ADcoord: 22..93
e-value: 1.4E-11
score: 44.4
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 21..91

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067170-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
VAVEKTPTKKYARSVDSSKLNCCRLCGEEKTRYQKVLSNVGTKKNLVSKIEQCCGILIKCDDELPSTICTACEAFVEKVIQFKTKCQRVNDEMNLTTTTKRCLKVTDVVLSPSRRPVPNKKLKFEAKTNIDIDSEDAFAAKLIELDSIDPCKIASLIFLSCTNIFSQIKRLIIQSIQK20406080100120140160Sequence
Match NameE-valueIdentityDescription
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