TCONS_00067128-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00067128-protein
Unique Name	TCONS_00067128-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	380

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00067128-protein ID=TCONS_00067128-protein|Name=TCONS_00067128-protein|organism=Clytia hemisphaerica|type=polypeptide|length=380bp
MSRRELKKEIEYLKTVFPKTQHVLRILSASTDDLTCSFTDNSGKKHTIIC
SITDSYPDFPPIWCSESEAPQLVEIVEKINAITSSNHLLFTMTKTLAIEL
FTMIKVEVPTSVLEATLVSDEKGVDEDYEMDEVDCDDEEENEIEDEDDDD
DPIDQECFDFREDPVNDESKEKDEVGEANYSQLQKLRGVQREEYLSGKVS
GSVQATDRLMKELKNIYKSDSFKKNLYTLELKEESNLYDWFVKLKGFDKE
SHLHKDLLKLFKSDSKTDHICLNLSYTSRFPMEPPFVRVCYPAITGGYVL
NGGAICMELLTPQGWSSAYSIEALIMQISATLVKGKARVDFSSTNRINTV
YSLNKAQQSYKTMVQIHEKSGWFTPPKDEG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041945	XLOC_041945	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00067128	TCONS_00067128	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000608	UBQ-conjugat_E2
IPR016135	UBQ-conjugating_enzyme/RWD

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00212	ubc_7	coord: 207..373 e-value: 2.9E-4 score: 24.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..176
IPR000608	Ubiquitin-conjugating enzyme E2	PFAM	PF00179	UQ_con	coord: 271..365 e-value: 5.0E-7 score: 29.3
IPR000608	Ubiquitin-conjugating enzyme E2	PROSITE	PS50127	UBIQUITIN_CONJUGAT_2	coord: 207..332 score: 11.857
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	3.10.110.10		coord: 1..114 e-value: 0.0069 score: 15.8
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	3.10.110.10		coord: 153..367 e-value: 1.9E-22 score: 79.4
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	SUPERFAMILY	54495	UBC-like	coord: 202..337

Blast

[Close]

BLAST of TCONS_00067128-protein vs. Swiss-Prot (Human)
Match: UB2Q2 (Ubiquitin-conjugating enzyme E2 Q2 OS=Homo sapiens GN=UBE2Q2 PE=1 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 6.855e-100
Identity = 170/390 (43.59%), Postives = 250/390 (64.10%), Query Frame = 0

Query:    1 MSRRELKKEIEYLKTVFPKTQHVLRILSASTDDLTCSF-TDNSGKKH------TIICSITDSYPDFPPIWCSESEAPQLVEIVEKINAITSSNHLLFTMTKTLAIELFTMIKV--EVPTSVLEATLVSDEKGVDEDYEMDEVDCDDEEENEIEDEDDDDDPIDQECFDFRED-PVNDESKEKDEVGEANYSQLQKLRGVQREEYLSGKVSGSVQATDRLMKELKNIYKSDSFKKNLYTLELKEESNLYDWFVKLKGFDKESHLHKDLLKLFKSDSKTDHICLNLSYTSRFPMEPPFVRVCYPAITGGYVLNGGAICMELLTPQGWSSAYSIEALIMQISATLVKGKARVDFSSTNRINTVYSLNKAQQSYKTMVQIHEKSGWFTPPKDEG 380
            MS   LK E+++L ++F K     RI+S   D+L C F     G  H      T+ C+IT+SYP   PIW  +SE P L  ++E++   T +N+LL    K L  EL ++  +   +   +L+  L + + G  E+   +E + ++E   +IED D          ++ +E+ P++ +  E + + + N + L+K+R  QR+++L+G VSGSVQA+DRLMKEL++IY+S S+K  +Y++EL  +S LYDW VKL+  D +S LH DL ++ K     ++I LN S+   FP +PPFVRV  P ++GGYVL GGA+CMELLT QGWSSAYSIE++IMQI+ATLVKGKARV F +       Y+L +AQQSY ++VQIHEK+GW+TPPK++G
Sbjct:    1 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNITESYPSSSPIWFVDSEDPNLTSVLERLED-TKNNNLLRQQLKWLICELCSLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDH---------YEMKEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDS-LYDWHVKLQKVDPDSPLHSDL-QILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGAN---KNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG 375

The following BLAST results are available for this feature:

BLAST of TCONS_00067128-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00067128-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
UB2Q2	6.855e-100	43.59	Ubiquitin-conjugating enzyme E2 Q2 OS=Homo sapiens...	[more]

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TCONS_00067128-protein (polypeptide) - C. hemisphaerica

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