Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00066942-protein ID=TCONS_00066942-protein|Name=TCONS_00066942-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
Term Definition
GO:0005515 protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0005515 protein binding
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
50 100 150 200 250 300 350 400 Expect = 0.02 / Score = 24.1 Expect = 0.07 / Score = 22.2 Expect = 22.0 / Score = 11.8 Expect = 9.7E-5 / Score = 31.7 Expect = 0.96 / Score = 18.5 Expect = 0.071 / Score = 22.2 Expect = 0.042 / Score = 23.0 Expect = 0.0086 / Score = 25.3 Expect = 0.0082 / Score = 25.3 Expect = 4.7E-4 / Score = 29.5 Expect = 220.0 / Score = 4.1 Expect = 0.38 / Score = 19.8 Expect = 2.1E-6 / Score = 37.3 Expect = 6.9E-11 / Score = 41.8 Score = 11.432 Expect = 3.7E-16 / Score = 58.2 Expect = 4.1E-18 / Score = 64.6 Expect = 3.1E-14 / Score = 52.0 Expect = 0.95 / Score = 9.6 Expect = 0.049 / Score = 13.6 Expect = 1.6 / Score = 8.9 Expect = 2.2E-13 / Score = 49.4 Score = Sequence SM00367 SM00256 PF12937 PS50181 G3DSA:3.80.10.10 G3DSA:3.80.10.10 PF13516 G3DSA:1.20.1280.50 SSF52047
IPR Term IPR Description Source Source Term Source Description Alignment
IPR006553 Leucine-rich repeat, cysteine-containing subtype SMART SM00367 LRR_CC_2 coord: 229..254 IPR001810 F-box domain SMART SM00256 fbox_2 coord: 37..77 IPR001810 F-box domain PFAM PF12937 F-box-like coord: 36..78 IPR001810 F-box domain PROSITE PS50181 FBOX coord: 31..77 IPR032675 Leucine-rich repeat domain, L domain-like GENE3D 3.80.10.10 coord: 84..206 IPR032675 Leucine-rich repeat domain, L domain-like GENE3D 3.80.10.10 coord: 207..309 IPR001611 Leucine-rich repeat PFAM PF13516 LRR_6 coord: 338..356 None No IPR available GENE3D 1.20.1280.50 coord: 31..78 None No IPR available SUPERFAMILY 52047 RNI-like coord: 56..417
Blast
BLAST of TCONS_00066942-protein vs. Swiss-Prot (Human)
Match:
FXL20 (F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2)
HSP 1 Score: 490.345 bits (1261), Expect = 2.052e-172
Identity = 238/433 (54.97%), Postives = 307/433 (70.90%), Query Frame = 0
Query: 13 NGVHKNKRLEGYFEDAATGLINKKLPKELLLRVFSFLDIVALCRCAQVSKAWNLLALDGSNWQQVNLFEFQRDVRTNVVQSLSRRCGGFLKTLNLKGCQGIEDDALRTFAQNCKNIEELVLCDCNKITNKTCIYLSNFANKLVVLDFESCTQVDDLGLAKIGSGCSRLEHLNIAWCRKVSSAGLIAIAHGCPSLELLVASGCVSIRDEGLRVLAVHCGGLKKIVLQGCTNITDNGIKPLGDNCNALEFINISECEALTDQTLKYIADGCHELKTLEAARCSQFTDTGFSTLARGCHSMQRLDLEECTLITDHTLHCLSYNCSEIVNLTFSHCELITDEGIRHLAGGTCAIEKLEIIELDNCPLITDQALEYLMNCRSLNRLELYDCHNITRGGIRRLKSRLPNVRVQAYFAPVTPPPATPNRRQRSCRCCEIL 445
NGV K+ R E F ++ +INKKLPKELLLR+FSFLD+V LCRCAQVS+AWN+LALDGSNWQ+++LF+FQRD+ VV+++S+RCGGFL+ L+L+GC G+ D+ALRTFAQNC+NIE L L C K T+ TC LS F +KL LD SCT + ++ L + GC LE LNI+WC +V+ G+ A+ GC L+ L GC + DE L+ + HC L + LQ C ITD G+ + C+ L+ + S C +TD L + C L+ LE ARCSQ TD GF+TLAR CH ++++DLEEC ITD TL LS +C + L+ SHCELITD+GIRHL G CA ++LE+IELDNCPLITD +LE+L +C SL R+ELYDC ITR GI+RL++ LPN++V AYFAPVTPPP+ RQR CRCC IL
Sbjct: 6 NGVTKS-RFE-MFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL 436
The following BLAST results are available for this feature:
BLAST of TCONS_00066942-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
M S S T P I P L N K V S N G V H K N K R L E G Y F E D A A T G L I N K K L P K E L L L R V F S F L D I V A L C R C A Q V S K A W N L L A L D G S N W Q Q V N L F E F Q R D V R T N V V Q S L S R R C G G F L K T L N L K G C Q G I E D D A L R T F A Q N C K N I E E L V L C D C N K I T N K T C I Y L S N F A N K L V V L D F E S C T Q V D D L G L A K I G S G C S R L E H L N I A W C R K V S S A G L I A I A H G C P S L E L L V A S G C V S I R D E G L R V L A V H C G G L K K I V L Q G C T N I T D N G I K P L G D N C N A L E F I N I S E C E A L T D Q T L K Y I A D G C H E L K T L E A A R C S Q F T D T G F S T L A R G C H S M Q R L D L E E C T L I T D H T L H C L S Y N C S E I V N L T F S H C E L I T D E G I R H L A G G T C A I E K L E I I E L D N C P L I T D Q A L E Y L M N C R S L N R L E L Y D C H N I T R G G I R R L K S R L P N V R V Q A Y F A P V T P P P A T P N R R Q R S C R C C E I L 50 100 150 200 250 300 350 400 Expect = 2.05e-172 / Id = 54.97 Sequence FXL20
Match Name E-value Identity Description
FXL20 2.052e-172 54.97 F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBX... [more]
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