TCONS_00066893-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00066893-protein
Unique Name	TCONS_00066893-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	552

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00066893-protein ID=TCONS_00066893-protein|Name=TCONS_00066893-protein|organism=Clytia hemisphaerica|type=polypeptide|length=552bp
MLALLRRHSNFTKFGCRTIRRFRVLDGNLSLDQSERDRLADEAQKSEELY
QEKLAQVMAGKLKHFQXLYQEKLAQIMAGSSASAVARHTQKNKKLLARDR
IKLLVDQDYPVLELSALAGLDMEYGDVLSAGIVGCIAKVSGQLCVINAND
ATVKGGTIYPISLKKQLRLQEICEQNNLPAVYLIDSGGAFLPLQSEIFVE
GGRSFYNEAIMNSKGIPQLCMVAGSCTAGAAYIPTMANEVVMVDKIGTIF
LAGPPLVHAAIGQQITEEALGGATVHCEVSGCADYKAKDEIDAIDTMKDV
LSTLNLPEFLPKLSFVEDPFFNEEDLSILSVKRDADGKLDTKKIVARIVD
GSRFHEYKPTYGREIICGFARLGSMLVGVVANDGRFTPQSCLKASNFVCL
CDERGIPLVFLQDILKVENAETAIELIKYQAELMSYVATTQVPKITIIMG
NSFGVGNYAMCGRSMSPRFLFSWPTARVSIHSVDDMKQTINNDEKHLQRL
EREVTSVYSSSRIWDDGIVLPKDTRQALIQSLTASMMHKETKKSSNKNVV
RL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041824	XLOC_041824	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00066893	TCONS_00066893	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR034733	AcCoA_carboxyl
IPR011763	COA_CT_C
IPR011762	COA_CT_N
IPR029045	ClpP/crotonase-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0016874	ligase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016874	ligase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

ZOOM

x 1

POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 483..503
None	No IPR available	COILS	Coil	Coil	coord: 36..56
None	No IPR available	GENE3D	3.90.226.10		coord: 44..300 e-value: 1.1E-47 score: 161.9
None	No IPR available	GENE3D	3.90.226.10		coord: 301..512 e-value: 1.7E-35 score: 122.3
IPR034733	Acetyl-CoA carboxylase	PFAM	PF01039	Carboxyl_trans	coord: 91..542 e-value: 3.0E-87 score: 293.3
IPR011763	Acetyl-coenzyme A carboxyltransferase, C-terminal	PROSITE	PS50989	COA_CT_CTER	coord: 323..552 score: 12.72
IPR011762	Acetyl-coenzyme A carboxyltransferase, N-terminal	PROSITE	PS50980	COA_CT_NTER	coord: 58..316 score: 35.435
IPR029045	ClpP/crotonase-like domain	SUPERFAMILY	52096	ClpP/crotonase	coord: 74..306
IPR029045	ClpP/crotonase-like domain	SUPERFAMILY	52096	ClpP/crotonase	coord: 275..532

Blast

[Close]

BLAST of TCONS_00066893-protein vs. Swiss-Prot (Human)
Match: MCCB (Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Homo sapiens GN=MCCC2 PE=1 SV=1)

HSP 1 Score: 398.282 bits (1022), Expect = 7.427e-133
Identity = 224/516 (43.41%), Postives = 314/516 (60.85%), Query Frame = 0

Query:   49 LYQEKLAQVMAGKLKHFQXLYQEKLAQIMAGSSASAVARHTQKNKKLLARDRIKLLVDQDYPVLELSALAGLDM-EYGDVLSAGIVGCIAKVSGQLCVINANDATVKGGTIYPISLKKQLRLQEICEQNNLPAVYLIDSGGAFLPLQSEIFVEG---GRSFYNEAIMNSKGIPQLCMVAGSCTAGAAYIPTMANEVVMVDKIGTIFLAGPPLVHAAIGQQITEEALGGATVHCEVSGCADYKAKDEIDAIDTMKDVLSTLNLPEFLP-KLSFVEDPFFNEEDLSILSVKRDADGKLDTKKIVARIVDGSRFHEYKPTYGREIICGFARLGSMLVGVVANDGRFTPQSCLKASNFVCLCDERGIPLVFLQDI--LKVENAETAIELIKYQAELMSYVATTQVPKITIIMGNSFGVGNYAMCGRSMSPRFLFSWPTARVSI---HSVDDMKQTINNDEKH------------------LQRLEREVTSVYSSSRIWDDGIVLPKDTRQALIQSLTASM 536
            LYQE   Q     +K       E++  I  G    A A H  + K LL R+RI  L+D   P LELS  AG  + +  +V   GI+  I +VSG  C+I ANDATVKGG  YP+++KKQLR QEI  QN LP +YL+DSGGA+LP Q+++F +    GR+FYN+AIM+SK I Q+ +V GSCTAG AY+P MA+E ++V K GTIFLAGPPLV AA G++++ E LGGA +HC  SG +D+ A D+  A+   + V+  LN  + L   +   E+P F  ++L  + V  +     D ++++ARIVDGSRF E+K  YG  ++ GFAR+    VG+V N+G    +S  K ++FV LC +R IPL+FLQ+I    V     A  + K  A++++ VA  QVPKIT+I+G S+G GNY MCGR+ SPRFL+ WP AR+S+       ++  TI  D++                   +++ E E    YSS+R+WDDGI+ P DTR  L  S +A++
Sbjct:   41 LYQENYKQ-----MKALVNQLHERVEHIKLGGGEKARALHISRGK-LLPRERIDNLIDPGSPFLELSQFAGYQLYDNEEVPGGGIITGIGRVSGVECMIIANDATVKGGAYYPVTVKKQLRAQEIAMQNRLPCIYLVDSGGAYLPRQADVFPDRDHFGRTFYNQAIMSSKNIAQIAVVMGSCTAGGAYVPAMADENIIVRKQGTIFLAGPPLVKAATGEEVSAEDLGGADLHCRKSGVSDHWALDDHHALHLTRKVVRNLNYQKKLDVTIEPSEEPLFPADELYGI-VGANLKRSFDVREVIARIVDGSRFTEFKAFYGDTLVTGFARIFGYPVGIVGNNGVLFSESAKKGTHFVQLCCQRNIPLLFLQNITGFMVGREYEAEGIAKDGAKMVAAVACAQVPKITLIIGGSYGAGNYGMCGRAYSPRFLYIWPNARISVMGGEQAANVLATITKDQRAREGKQFSSADEAALKEPIIKKFEEEGNPYYSSARVWDDGIIDPADTRLVLGLSFSAAL 549

The following BLAST results are available for this feature:

BLAST of TCONS_00066893-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00066893-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
MCCB	7.427e-133	43.41	Methylcrotonoyl-CoA carboxylase beta chain, mitoch...	[more]

You are here

TCONS_00066893-protein (polypeptide) - C. hemisphaerica

ZOOM

x 1

POSITION

0

ZOOM

x 1

POSITION

0