TCONS_00066885-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00066885-protein
Unique Name	TCONS_00066885-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	565

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00066885-protein ID=TCONS_00066885-protein|Name=TCONS_00066885-protein|organism=Clytia hemisphaerica|type=polypeptide|length=565bp
ETLSRPALLITDAFNAVKQQALRRERDIQLMNQILTTVRKDGNVLLACDT
AGRILELTQLLDQLWRSQDSGLSVYSLVVMNNVVYNTVEFAKSQVEWMSD
KMIKSFEATRTNPFSFKHIVQCHSIKEVEDVPSPKVVLASTADLNSGFSR
EIFISWAPDPKNTVIFTYSTAPGSLARQLIDNPDTKSIEIEVNKKVKLEG
AELAEFLENEKEKARLTRLTRKSLTSETGDNVFKQESESEDEEENALDLK
SKYDLMLTDEKLRSKSSFFKQAKIYPMFPYKEDRLKWDDYGEVIRPEDYM
ITETMMLDQPEVPEENDEMKLQQTLEDMKEEMELLEIKEPPTKCISQTIQ
LDIRCTLAYIDFEGRSDGESVKRILSLVKPRQLILVHATEQATRTLADHC
RNSNNMTISNIYTPVVNETVDATRESHIYQVKLKDALVSSLKFSTAQDIE
LAWVDGQLVMEERGEKFDKMETDFQKKEVVPVLEQMPQELVPGHSSVFIG
EPRLSDFKQVLTRNGIQAEFAGGALICNNVVAVKRNETGKITLEGGLCPE
YYQIRELLYEQYAIV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041822	XLOC_041822	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00066885	TCONS_00066885	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022712	Beta_Casp
IPR011108	RMMBL
IPR025069	Cpsf2_C
IPR001279	Metallo-B-lactamas

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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POSITION

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 318..338
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..247
IPR022712	Beta-Casp domain	SMART	SM01027	Beta_Casp_2	coord: 54..179 e-value: 2.3E-24 score: 96.9
IPR022712	Beta-Casp domain	PFAM	PF10996	Beta-Casp	coord: 55..179 e-value: 3.1E-22 score: 78.7
IPR011108	Zn-dependent metallo-hydrolase, RNA specificity domain	PFAM	PF07521	RMMBL	coord: 351..409 e-value: 2.5E-11 score: 43.3
IPR025069	Cleavage and polyadenylation specificity factor 2, C-terminal	PFAM	PF13299	CPSF100_C	coord: 431..463 e-value: 7.4E-6 score: 26.2 coord: 469..562 e-value: 7.0E-30 score: 104.3
IPR001279	Metallo-beta-lactamase	GENE3D	3.60.15.10		coord: 42..436 e-value: 1.7E-7 score: 29.8
IPR001279	Metallo-beta-lactamase	SUPERFAMILY	56281	Metallo-hydrolase/oxidoreductase	coord: 3..189 coord: 274..422

Blast

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BLAST of TCONS_00066885-protein vs. Swiss-Prot (Human)
Match: CPSF2 (Cleavage and polyadenylation specificity factor subunit 2 OS=Homo sapiens GN=CPSF2 PE=1 SV=2)

HSP 1 Score: 583.948 bits (1504), Expect = 0.000e+0
Identity = 310/606 (51.16%), Postives = 411/606 (67.82%), Query Frame = 0

Query:    1 ETLSRPALLITDAFNAVKQQALRRERDIQLMNQILTTVRKDGNVLLACDTAGRILELTQLLDQLWRSQDSGLSVYSLVVMNNVVYNTVEFAKSQVEWMSDKMIKSFEATRTNPFSFKHIVQCHSIKEVEDVPSPKVVLASTADLNSGFSREIFISWAPDPKNTVIFTYSTAPGSLARQLIDNPDTKSIEIEVNKKVKLEGAELAEFLENEKEKARLTRLTRKSLTSETGDNVFKQESESEDEEENALDLKSKYDLMLTDEKLRSKSSFFKQA-KIYPMFPYKEDRLKWDDYGEVIRPEDYMITETMMLDQPEVPEENDEMKLQQTLEDMKEEMELLEIKEPPTKCISQTIQLDIRCTLAYIDFEGRSDGESVKRILSLVKPRQLILVHATEQATRTLADHCRNSNNMTISNIYTPVVNETVDATRESHIYQVKLKDALVSSLKFSTAQDIELAWVDGQL----------VMEERGE-KFDKMETDFQ-----------------------------KKEVVPVLEQMPQELVPGHSSVFIGEPRLSDFKQVLTRNGIQAEFAGGALICNNVVAVKRNETGKITLEGGLCPEYYQIRELLYEQYAIV 565
            E LSRP+LLITD+FNA   Q  R++RD QL+  +L T+R DGNVL+A DTAGR+LEL QLLDQ+WR++D+GL VYSL ++NNV YN VEF+KSQVEWMSDK+++ FE  R NPF F+H+  CH + ++  VPSPKVVLAS  DL  GFSR++FI W  DPKN++I TY T PG+LAR LIDNP  K  EIE+ K+VKLEG EL E+LE EK K    +   +S  ++   +    ES+ E++ +     K+K+DLM+  E  R K SFFKQA K YPMFP  E+R+KWD+YGE+I+PED+++ E           E ++ KL+  L +  E M+  ++ + PTKCIS T  ++I+  + YID+EGRSDG+S+K+I++ +KPRQLI+VH   +A++ LA+ CR      I  +Y P ++ETVDAT E+HIYQV+LKD+LVSSL+F  A+D ELAW+DG L          V+ E GE K D  +++ Q                             + E++P LE +P   VPGH SVF+ EPRLSDFKQVL R GIQAEF GG L+CNN VAV+R ETG+I LEG LC ++Y+IR+LLYEQYAIV
Sbjct:  190 EMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSS---DESDIEEDIDQPSAHKTKHDLMMKGEGSR-KGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPELQA-------TEEEKSKLESGLTNGDEPMD-QDLSDVPTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDI-KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782

The following BLAST results are available for this feature:

BLAST of TCONS_00066885-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00066885-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
CPSF2	0.000e+0	51.16	Cleavage and polyadenylation specificity factor su...	[more]

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TCONS_00066885-protein (polypeptide) - C. hemisphaerica

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