TCONS_00066856-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00066856-protein
Unique Name	TCONS_00066856-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1092

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00066856-protein ID=TCONS_00066856-protein|Name=TCONS_00066856-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1092bp
MIQQAFLCLFMVLSTHGYNLDYEYAVVKKGSTDGELFGFSVLQHKENKNN
WMLVGAPKGSNQFLRGQDQESGTVFKCNATSPTLECTQQVPFDEASSSGV
ESKKDQWLGVSLTSGGNDDAVMSCGHRYNYHGSSSKSYSLLIGQCYTVED
NLEYGSGAFSPCKEPLKPFLGGGSTKTPNYQNYGQCLSGLGTGIQKSDGD
ESDILIGALGALSLTGRIFKERSDNTNPKWGPTNNEAKFQDSYFGYAVAM
GKFTVNQGEVAVGGPRHESHGKVLIYKNNAFKDISSEPAFDEKIIQVPSA
DYEDAEVQIASGFGIALTAIDIDHDGFDELIVGAPFYADKKKPNMGRVYV
FGLKDNKFALKKSFYGGKEAYSSFGYSVANVGDLNLDGYDDLVVGAPHRE
DNKGVVFIYEGTNIGLAEEPQIIKAEEVVSTLASAGTLTLGGFGRSVAGG
LDLDNNGYKDVLVGAYSTDHAVLLRSRPIISPHATLQFDPPQIDPREENK
NCDKGGPTKTVCFNVKLCHNITGQEFSKTTIKSVNMKFTLTADAGRPNDP
RVFITDKSNVLEFVAPSYSNEIKCYEIKDLYLEFGPDGTIAEYPDVKFTV
AYSIPYDEAAGSPKPVRTDVSVASLDAYPILHKKFKDGHAIDAGLEGTQL
TFKRECTQCIPDLKVTSAQSVYSLRYRGTEFEFNITIENNGKDPAYAVDL
AFDAPESMKVALVREVGSTKGRDCSNNTCLNIIPKLPSNSKKHFLISLNT
EKYLPEHSNTAMIKVSSINDEQPATLADNEKIISFDIKVVADISLIGGKS
TQSVAYTGKIKGEKAMEGFDDIGQEIEHKFAVRNRGPDLLPSAILTINWP
ALTLSGKHLLYLIDVTKSPRMVCEQIPVNTAEITSRARRGNFILPVGGIK
EELIARVRRQADNTDNNSTTTPTPTTDGGDGGTGGINVVPVSKPREGITL
SCPDKTAICQTIRCEITNLPSKISEQIVFRSRLWEPSLLLDYYGEVLTIV
SNGKVELGQNISYITDPDPNNNYNDVYTIINPVLVKAKSKIAVWIIALAV
VAGIILLALLVFGLFKLGFFKRNRKPEYYGQKKEQEKSLLKK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041814	XLOC_041814	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00066856	TCONS_00066856	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000413	Integrin_alpha
IPR013519	Int_alpha_beta-p
IPR013649	Integrin_alpha-2
IPR013517	FG-GAP
IPR018184	Integrin_alpha_C_CS
IPR032695	Integrin_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0008305	integrin complex

Vocabulary: **Biological Process**
Term	Definition
GO:0007155	cell adhesion

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007155	cell adhesion
cellular_component	GO:0008305	integrin complex

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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POSITION

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1086..1092
None	No IPR available	GENE3D	2.60.40.1530		coord: 791..1043 e-value: 6.2E-36 score: 123.2
None	No IPR available	GENE3D	2.60.40.1460		coord: 480..657 e-value: 3.2E-13 score: 49.8
None	No IPR available	GENE3D	1.20.5.930		coord: 1044..1074 e-value: 3.4E-12 score: 45.4
None	No IPR available	GENE3D	2.130.10.130		coord: 18..479 e-value: 2.1E-90 score: 303.3
None	No IPR available	GENE3D	2.60.40.1510		coord: 658..790 e-value: 1.1E-10 score: 41.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 909..933
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 485..504
None	No IPR available	SUPERFAMILY	69318	Integrin alpha N-terminal domain	coord: 18..478
IPR000413	Integrin alpha chain	PRINTS	PR01185	INTEGRINA	coord: 241..253 score: 51.59 coord: 373..397 score: 51.12 coord: 443..464 score: 55.32 coord: 470..489 score: 36.1 coord: 1053..1072 score: 58.17 coord: 306..326 score: 39.02
IPR013519	Integrin alpha beta-propellor	SMART	SM00191	int_alpha_rpt	coord: 309..363 e-value: 2.9E-7 score: 40.1 coord: 240..292 e-value: 1.8E-4 score: 30.9 coord: 33..93 e-value: 0.0055 score: 25.9 coord: 370..423 e-value: 1.4E-12 score: 57.8 coord: 439..495 e-value: 0.0064 score: 25.7
IPR013519	Integrin alpha beta-propellor	PROSITE	PS51470	FG_GAP	coord: 231..285 score: 7.825
IPR013519	Integrin alpha beta-propellor	PROSITE	PS51470	FG_GAP	coord: 299..358 score: 10.435
IPR013519	Integrin alpha beta-propellor	PROSITE	PS51470	FG_GAP	coord: 23..86 score: 8.869
IPR013519	Integrin alpha beta-propellor	PROSITE	PS51470	FG_GAP	coord: 94..157 score: 7.193
IPR013519	Integrin alpha beta-propellor	PROSITE	PS51470	FG_GAP	coord: 429..491 score: 10.861
IPR013519	Integrin alpha beta-propellor	PROSITE	PS51470	FG_GAP	coord: 359..418 score: 12.42
IPR013519	Integrin alpha beta-propellor	PROSITE	PS51470	FG_GAP	coord: 176..230 score: 6.495
IPR013649	Integrin alpha-2	PFAM	PF08441	Integrin_alpha2	coord: 476..964 e-value: 2.0E-50 score: 172.0
IPR013517	FG-GAP repeat	PFAM	PF01839	FG-GAP	coord: 313..351 e-value: 6.6E-8 score: 32.4 coord: 374..408 e-value: 7.4E-7 score: 29.1
IPR018184	Integrin alpha chain, C-terminal cytoplasmic region, conserved site	PROSITE	PS00242	INTEGRIN_ALPHA	coord: 1065..1072
IPR032695	Integrin domain	SUPERFAMILY	69179	Integrin domains	coord: 942..1046 coord: 790..913
IPR032695	Integrin domain	SUPERFAMILY	69179	Integrin domains	coord: 658..781
IPR032695	Integrin domain	SUPERFAMILY	69179	Integrin domains	coord: 478..579

Blast

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BLAST of TCONS_00066856-protein vs. Swiss-Prot (Human)
Match: ITA3 (Integrin alpha-3 OS=Homo sapiens GN=ITGA3 PE=1 SV=5)

HSP 1 Score: 261.922 bits (668), Expect = 1.228e-72
Identity = 282/1123 (25.11%), Postives = 485/1123 (43.19%), Query Frame = 0

Query:    4 QAFLCLFMVLSTHG------YNLDYEYAVVKKGSTDGELFGFSVLQHKENKNN---WMLVGAPKGSNQFLRGQDQESGTVFKCNATSPTLECTQQVPFDEASSSGVESKKDQWLGVSLTSGGNDDAVMSCGHRY-NYHGSSSKSYSLLIGQCYTVEDNLEYGSGAFSPCKEPLKPFLGGGSTKTPNYQNYGQCLSGLGTGIQKSDGDESDILIGALGALSLTGR---IFKERSDNTNPKWGPTNNEAKFQDSYFGYAVAMGKFTVNQGEVAV--GGPRHESHGKVLIYKNNAFKDISSEPAFDEKIIQVPSADYEDAEVQIASGFGIALTAIDIDHDGFDELIVGAPFYADKKKPNMGRVYVF-GLKDNKFALKKSFYGGKEAYSSFGYSVANVGDLNLDGYDDLVVGAPHREDNKGVVFIYEGTNIGLAEEP-QIIKAEEVVSTLASAGTLTLGGFGRSVAGGLDLDNNGYKDVLVGAYSTDHAVLLRSRPIIS-PHATLQFDPPQIDPREENKNCDKGGPTKTVCFNVKLCHNITGQEFSKTTIKSVNMKFTLTADAGRPNDPRVFITDKSNVLE--FVAPSYSNEIKCYEIKDLYLEFGPDGTIAEYPDVKFTVAYSIPYDEAAGSPKPVRTDVSVASLDAYPILHKKFKDGHAIDAGLEGTQLTFKREC---TQCIPDLKVTSA------QSVYSLRY----RGTEFEFNI----TIENNGKDPAYAVDLAFDAPESMKVALVREVGSTKGRDCSNNTCLNIIPKLPSNSKKHFLISLNTEKYLPEHSNTAMIKVSSINDEQPATLADNEKIISFDIKVVADISLIGGKSTQSVAYTGKIKGEKAMEGFDDIGQEIEHKFAVRNRGPDL--LPSAILTINWPALTLSGKHLLYLIDVTKSPRMVCEQIPVNTAEITSRARRGNFILPVGGIKEELIARVRRQADNTDNNSTTTPTPTTDGGDGGTGGINVVPVSKPREGITLSCPDKTAICQTIRCEITNLPSKISEQIVFRSRLWEPSLLLDYYGEVLTIVSNGKVELGQNISYITDPDPNNNYNDVYTIINPVLVKAKSKIAVWIIALAVVAGIILLALLVFGLFKLGFFKRNRKPEYYGQKKEQEK 1087
            +  LC   ++   G      +NLD  + VVK+    G LFG+SV  H++ +      +L GAP+       G    +G V+ C  T+   +C +++     +  G    +D WLGV++ S G    V+ C HRY     S S+    ++G+CY   ++LE  S       +  + +         +Y   G C  G   G       ++ +  GA GA +  G    I ++  D +   +    ++      Y GY + +G F ++   + +  G PRH   G V +    A  D+      +                Q+ + FG A+   D+++DG+ +L+VGAP+Y ++K+   G +YVF       F    S      + S+FG SVA++GD+N DG+ D+ VGAP   +  G V+IY  ++ GL  +P Q+I  E++       G   L  FG S++G +D+D N Y D+LVG+ S DH VLLR+RP+I+  H TL   P  +DP      C     T T C  V+LC        +    +++ + +TL AD  R      F   +S V    F  P    E++C +++ L +    D    +   +  ++ YS+P         P R  + + SLDAYPIL++      A++     T++ F++EC    +C  +L++ +A      Q +  L+Y    R      N+    T E +G+D A+   L    P ++ ++ VR  G+ +  +       N   +   N +   LI+      +  H+    +++          L      +  D  +   +S++  +  QS  + G + GE  M+  +D+G  ++++F V   G  L  L + +L + WP    +GK LLY                    EIT          P G +   L   +    D   +           GG  G   + +    K +    L+C    A C  + C I + P  +   +  ++R+W  + + DY  +   +  NG   L    S  T    N        I + ++ +  ++I +W++ +AV AG++LL L++  L+K GFFKR R    Y  K+++ +
Sbjct:   13 RLMLCALALMVAAGGCVVSAFNLDTRFLVVKEAGNPGSLFGYSVALHRQTERQQRYLLLAGAPR-ELAVPDGYTNRTGAVYLCPLTAHKDDC-ERMNITVKNDPGHHIIEDMWLGVTVASQGPAGRVLVCAHRYTQVLWSGSEDQRRMVGKCYVRGNDLELDS------SDDWQTYHNEMCNSNTDYLETGMCQLGTSGGFT-----QNTVYFGAPGAYNWKGNSYMIQRKEWDLSEYSYKDPEDQGNL---YIGYTMQVGSFILHPKNITIVTGAPRHRHMGAVFLLSQEAGGDLRRRQVLEGS--------------QVGAYFGSAIALADLNNDGWQDLLVGAPYYFERKEEVGGAIYVFMNQAGTSFPAHPSLLLHGPSGSAFGLSVASIGDINQDGFQDIAVGAPF--EGLGKVYIYHSSSKGLLRQPQQVIHGEKL-------GLPGLATFGYSLSGQMDVDENFYPDLLVGSLS-DHIVLLRARPVINIVHKTLVPRPAVLDP----ALC-----TATSCVQVELCFAYNQSAGNPNYRRNITLAYTLEADRDRRPPRLRFAGSESAVFHGFFSMP----EMRCQKLELLLM----DNLRDKLRPIIISMNYSLPLR------MPDRPRLGLRSLDAYPILNQ----AQALE---NHTEVQFQKECGPDNKCESNLQMRAAFVSEQQQKLSRLQYSRDVRKLLLSINVTNTRTSERSGED-AHEALLTLVVPPALLLSSVRPPGACQANETIFCELGNPFKR---NQRMELLIAFEVIG-VTLHTRDLQVQLQLSTSSHQDNLWPMILTLLVDYTLQTSLSMVNHR-LQSF-FGGTVMGESGMKTVEDVGSPLKYEFQVGPMGEGLVGLGTLVLGLEWPYEVSNGKWLLY------------------PTEITVHGNGSWPCRPPGDLINPLNLTLSDPGDRPSSPQRRR-RQLDPGGGQGPPPVTLAAAKKAKSETVLTCATGRAHCVWLECPIPDAP--VVTNVTVKARVWNSTFIEDYR-DFDRVRVNGWATLFLRTSIPTINMENKTTWFSVDIDSELVEELPAEIELWLVLVAVGAGLLLLGLIILLLWKCGFFKRARTRALYEAKRQKAE 1036

The following BLAST results are available for this feature:

BLAST of TCONS_00066856-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00066856-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
ITA3	1.228e-72	25.11	Integrin alpha-3 OS=Homo sapiens GN=ITGA3 PE=1 SV=...	[more]

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TCONS_00066856-protein (polypeptide) - C. hemisphaerica

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