TCONS_00066790-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00066790-protein
Unique Name	TCONS_00066790-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	746

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00066790-protein ID=TCONS_00066790-protein|Name=TCONS_00066790-protein|organism=Clytia hemisphaerica|type=polypeptide|length=746bp
MSEQLFQEASTAFQEWCKRNSVPVLSLDPTSTEKDDLKSIVQSIGNARFV
AISEGFHNCKEMMSLHHRIIRHLVEECGFNIVLSESGFPESLYINDYIRG
KSIPEEIDVWKNGLNKMYSAWREGQALIEYLKKNNKDYGNSLEYYGVDIG
GFYQDWVTPFNIIFKYIKTVDEDYCKDLESKLLPYLNQMSTNARKNYAEN
FDLHQKALLSAILDEAVSYFGSKADEYVSRSSKEDYEKIRQSLTSMQLAE
NYYRNYDTVSKKYVGLNGREIAMAQNCLWVLNKRSDAKVVWIDHVIHTKT
KSQLQDGVWGNFTPAGQLIKQALGKDYYGIGMVYGSGQFWNKWQRPAERF
IDKIPEWDEKRKQKENRMNDPAPVIYGLEFQARSLCPQFGETEAIRFLVG
TQSLRNDNQVHLIDFEDESNLVTKHVFSHTPGEIWNIASNPSDKNILATC
YSKIIDGKTKRFAAMWRIPPLDETAPPVYELTPGDNNGKCVSLQHVCELD
AGHGDVKKVMWNPSSDNDKLLTISERHIDLWQTSNTGADHVDTITLEGKA
QLQYSVGRFNPHHGGSQIATGIDCHIKGYDLRSMSSSFSIENAHSQLVRD
LDMNPNKQYYLASCSDDCKVKFWDIRNTKECLMTRSDHSHWVWSIRYNNF
HDQLILTSSSDSRVILSNIASLSSEPFGHLDDEDEEEEKPREPIPDRLIS
TFEEHEDSVYAVEWSSVDPWIFASLSYDGRLVINRVPRVEKYKILL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041765	XLOC_041765	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00066790	TCONS_00066790	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR007815	Emycin_Estase
IPR015943	WD40/YVTN_repeat-like_dom
IPR019775	WD40_repeat_CS
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0046677	response to antibiotic

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046677	response to antibiotic
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 420..456 e-value: 400.0 score: 0.6 coord: 583..624 e-value: 1.5E-5 score: 34.5 coord: 695..735 e-value: 0.013 score: 24.7 coord: 492..532 e-value: 47.0 score: 6.4 coord: 628..668 e-value: 0.0022 score: 27.3
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 593..624 e-value: 1.9E-4 score: 22.0
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 591..633 score: 11.043
IPR007815	Erythromycin esterase	PFAM	PF05139	Erythro_esteras	coord: 74..349 e-value: 1.2E-31 score: 110.7
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 396..734 e-value: 7.4E-38 score: 129.7
None	No IPR available	GENE3D	1.20.1440.30		coord: 159..287 e-value: 1.8E-8 score: 34.7
None	No IPR available	GENE3D	3.40.1660.10		coord: 5..107 e-value: 1.3E-15 score: 57.4
None	No IPR available	SUPERFAMILY	159501	EreA/ChaN-like	coord: 9..351
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 611..625
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 591..677 score: 12.341
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 406..733

Blast

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BLAST of TCONS_00066790-protein vs. Swiss-Prot (Human)
Match: TSSC1 (Protein TSSC1 OS=Homo sapiens GN=EIPR1 PE=1 SV=2)

HSP 1 Score: 457.603 bits (1176), Expect = 6.853e-156
Identity = 219/390 (56.15%), Postives = 288/390 (73.85%), Query Frame = 0

Query:  368 MNDPAPVIYGLEFQARSLCPQFGETEAIRFLVGTQSLRNDNQVHLIDFEDESNLVTKHVFSHTPGEIWNIASNPSDKNILATCYSKIIDGKTKRFAAMWRIPPLDETAPPVYELTPGDNNGKCVSLQHVCELD-AGHGDVKKVMWNPSSDNDKLLTISERHIDLW--QTSNTGADHVDTITLEGKAQLQYSVGRFNPHHGGSQIATGIDCHIKGYDLRSMSSSFSIENAHSQLVRDLDMNPNKQYYLASCSDDCKVKFWDIRNTKECLMTRSDHSHWVWSIRYNNFHDQLILTSSSDSRVILSNIASLSSEPFGHL--------DDEDEEEEKPREPIPDRLISTFEEHEDSVYAVEWSSVDPWIFASLSYDGRLVINRVPRVEKYKILL 746
            M D APVIYGLEFQAR+L PQ  ET+AIRFLVGTQSL+ DNQ+H+IDF+DE+N++ K+V  H  GEIW+I+++P+D+ +L TCY++  D K    AA+WR+P   E+       +P D++    +L+ +C LD   HG++  V+W P  D  K++++++ HI LW  Q S++ A    + +LEGK QL+++ GR++PHH  +Q+AT  D  ++G+D RSMS  + IENAH QLVRDLD NPNKQYYLASC DDCKVKFWD RN  E + T  +HSHWVW++RYN+ HDQL+LT SSDSRVILSN+ S+SSEPFGHL         ++   EEK +EP+ D +I+T+EEHEDSVYAV+WSS DPW+FASLSYDGRLVINRVPR  KY ILL
Sbjct:    1 MEDDAPVIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGEIWHISASPADRGVLTTCYNRTSDSKVLTCAAVWRMPKELESGS---HESPDDSSSTAQTLELLCHLDNTAHGNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLEGKGQLKFTSGRWSPHHNCTQVATANDTTLRGWDTRSMSQIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVWNVRYNHSHDQLVLTGSSDSRVILSNMVSISSEPFGHLVDDDDISDQEDHRSEEKSKEPLQDNVIATYEEHEDSVYAVDWSSADPWLFASLSYDGRLVINRVPRALKYHILL 387

The following BLAST results are available for this feature:

BLAST of TCONS_00066790-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00066790-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
TSSC1	6.853e-156	56.15	Protein TSSC1 OS=Homo sapiens GN=EIPR1 PE=1 SV=2	[more]

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TCONS_00066790-protein (polypeptide) - C. hemisphaerica

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