Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00066755-protein ID=TCONS_00066755-protein|Name=TCONS_00066755-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1453bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
Term Definition
IPR025574 Nucleoporin_FG_rpt
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
200 400 600 800 1000 1200 1400 Score = Score = Score = Score = Score = Score = Score = Score = Score = Score = Score = Expect = 7.3 / Score = 7.4 Expect = 0.12 / Score = 13.2 Expect = 9.2E-12 / Score = 45.5 Sequence Coil mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite PF13634
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 265..285 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..69 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 583..723 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1413..1453 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 412..433 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 862..905 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 796..818 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 831..850 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1107..1128 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1222..1271 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1285..1336 IPR025574 Nucleoporin FG repeat PFAM PF13634 Nucleoporin_FG coord: 1098..1181
Blast
BLAST of TCONS_00066755-protein vs. Swiss-Prot (Human)
Match:
NU214 (Nuclear pore complex protein Nup214 OS=Homo sapiens GN=NUP214 PE=1 SV=2)
HSP 1 Score: 109.383 bits (272), Expect = 8.761e-24
Identity = 83/342 (24.27%), Postives = 137/342 (40.06%), Query Frame = 0
Query: 150 APVKPSFAPVPDNR--------IPSPVIPPNKMAPPPAYQATPLLH--QPVAGGI--HQKREQDILSQTEKLDTALQNHINEEINSFNEELEAFTKAFSSVTERKDLIGSQEEMESLTNGINSFSAHIDEYKTNMEENKTESKELRNGVLSNFQNIDEALLRKEKTEDRRYTNVLKSRQLDPVSARQRKELRAQTNHLENLLGEINVALDTEWKENQIRMNKNRQKRAPGAHQNQQIYKTIEAIEKITNNLSNRIKGI--------------------------SLESEESHLITMNTTRLNSQMSEKNSTSSTTVTSSKDSTMKMNQLREMLSRRGNTPVR 453
P+K S P P R +PS V ++ PP A +P QP HQ ++ D + I EEI F +ELE S + +G+ EEM+ L + + E K E + L+ +L F ++EA + E+ D Y ++L R LDP S Q +E+R +++ + ++N LD EW ++ + K R P + + ++ T+ +I N R+ + S+ S +S L ++ L + + ++ T S +K S MK QLR L++R PVR
Sbjct: 637 VPLKSSVLPSPSGRSAQGSSSPVPSMVQKSPRITPPAAKPGSPQAKSLQPAVAEKQGHQWKDSD----------PVMAGIGEEIAHFQKELEELKARTSKACFQ---VGTSEEMKMLRTESDDLHTFLLEIKETTESLHGDISSLKTTLLEGFAGVEEAREQNERNRDSGYLHLLYKRPLDPKSEAQLQEIRRLHQYVKFAVQDVNDVLDLEWDQHLEQKKKQRHLLVP---ERETLFNTLANNREIINQQRKRLNHLVDSLQQLRLYKQTSLWSLSSAVPSQSSIHSFDSDLESLCNALLKTTI--ESHTKSLPKVPAKLSPMKQAQLRNFLAKRKTPPVR 960
The following BLAST results are available for this feature:
