Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00066749-protein ID=TCONS_00066749-protein|Name=TCONS_00066749-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
Term Definition
GO:0006355 regulation of transcription, DNA-templated GO:0070897 DNA-templated transcriptional preinitiation complex assembly
Vocabulary: Molecular Function
Term Definition
GO:0017025 TBP-class protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0070897 DNA-templated transcriptional preinitiation complex assembly
biological_process
GO:0006355 regulation of transcription, DNA-templated
molecular_function
GO:0017025 TBP-class protein binding
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
20 40 60 80 100 120 140 160 180 200 220 Score = 54.92 Score = 54.29 Score = 48.79 Score = 70.0 Score = 57.5 Expect = 1.5E-11 / Score = 54.3 Expect = 2.3E-22 / Score = 79.1 Score = Expect = 1.4E-24 / Score = 85.8 Expect = 8.3E-18 / Score = 63.0 Score = Expect = 3.94936E-14 / Score = 64.182 Score = Expect = 8.1E-15 / Score = 54.0 Score = 9.665 Score = Sequence PR00685 SM00385 G3DSA:1.10.472.10 SSF47954 PF00382 G3DSA:2.20.25.10 mobidb-lite cd00043 SSF57783 PF08271 PS51134 PS00782
IPR Term IPR Description Source Source Term Source Description Alignment
IPR000812 Transcription factor TFIIB PRINTS PR00685 TIFACTORIIB coord: 188..203 IPR013763 Cyclin-like SMART SM00385 cyclin_7 coord: 120..201 IPR013763 Cyclin-like GENE3D 1.10.472.10 coord: 95..218 IPR013763 Cyclin-like SUPERFAMILY 47954 Cyclin-like coord: 115..208 IPR013150 Transcription factor TFIIB, cyclin-like domain PFAM PF00382 TFIIB coord: 123..192 None No IPR available GENE3D 2.20.25.10 coord: 8..59 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 55..76 None No IPR available CDD cd00043 CYCLIN coord: 118..200 None No IPR available SUPERFAMILY 57783 Zinc beta-ribbon coord: 12..58 IPR013137 Zinc finger, TFIIB-type PFAM PF08271 TF_Zn_Ribbon coord: 14..55 IPR013137 Zinc finger, TFIIB-type PROSITE PS51134 ZF_TFIIB coord: 11..42 IPR023486 Transcription factor TFIIB, conserved site PROSITE PS00782 TFIIB coord: 154..169
Blast
BLAST of TCONS_00066749-protein vs. Swiss-Prot (Human)
Match:
TF2B (Transcription initiation factor IIB OS=Homo sapiens GN=GTF2B PE=1 SV=1)
HSP 1 Score: 306.605 bits (784), Expect = 2.747e-105
Identity = 146/236 (61.86%), Postives = 183/236 (77.54%), Query Frame = 0
Query: 1 MSSRRSYGGGSKLSCPNHPNAHLVEDHRAGDMVCPECGLVVGDRVVDVGSEWRTFSNESNGQDRSRVGGNENPFLSGQDLSTMVGTDRASGSGLDLQNYARYQNRSGISGSDRSLLNAIREIGTMASRINLPKNITDRANLLFKQVHDQRSLRGRSNDAIASACLYIACRQDGVPRTFKEICAISKIPKKEIGRCFKLILKNLEANVSVITSGDFM--VCTFHCSDKKSALMMKRI 234
M+S +++CPNHP+A LVED+RAGDM+CPECGLVVGDRV+DVGSEWRTFSN+ +D SRVG ++NP LS DLSTM+G + S + N ++YQNR +S SDR+++NA +EI TMA RINLP+NI DR N LFKQV++Q+SL+GR+NDAIASACLYIACRQ+GVPRTFKEICA+S+I KKEIGRCFKLILK LE +V +IT+GDFM C+ C K+ + I
Sbjct: 1 MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGN-SKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHI 235
The following BLAST results are available for this feature:
BLAST of TCONS_00066749-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
M S S R R S Y G G G S K L S C P N H P N A H L V E D H R A G D M V C P E C G L V V G D R V V D V G S E W R T F S N E S N G Q D R S R V G G N E N P F L S G Q D L S T M V G T D R A S G S G L D L Q N Y A R Y Q N R S G I S G S D R S L L N A I R E I G T M A S R I N L P K N I T D R A N L L F K Q V H D Q R S L R G R S N D A I A S A C L Y I A C R Q D G V P R T F K E I C A I S K I P K K E I G R C F K L I L K N L E A N V S V I T S G D F M V C T F H C S D K K S A L M M K R I T 20 40 60 80 100 120 140 160 180 200 220 Expect = 2.75e-105 / Id = 61.86 Sequence TF2B
Match Name E-value Identity Description
TF2B 2.747e-105 61.86 Transcription initiation factor IIB OS=Homo sapien... [more]
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