TCONS_00066637-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066637-protein
Unique NameTCONS_00066637-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length687

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066637-protein ID=TCONS_00066637-protein|Name=TCONS_00066637-protein|organism=Clytia hemisphaerica|type=polypeptide|length=687bp
CFRTENFTLVFIKSKGKMKTILLINALFLVNICHGVTYTYPGKGFTKFPI
LKSSQTTKISFEFQTSSTREEINILYVDDVENGGKSGDYLRVTLERGRLN
VHWDVSNGNYRDGDTKVIGHNLDDNIKHYVVIESYNGKDFLVRVDGGDVQ
SKSFSKAVRFNSEVYLGGCHPDPTKRTLQRDPYFCFQNGFIGCISNLRWS
TERGEPEQIVHPIESDNVAKGCTNRCLTDPSFSCSNRGRCLNQYIKTGCD
CRGTGFTGTTCQKPKQAVTFFGEQYVTWVPQTSMNSLVTDIFVRFKSNQP
SGIILFITGQSTSEFMLLELHKGTLILKTKINGYDEKVFKIPKSMNEKAS
NWRMVSFSRMGASTTISMDDGLYEYTNSVKRLENKVVQVKFIINKIYFGG
VDKLQDGDFALRKSDSKINFIGCLQNIDINQFELIGKITNSSSINDKSIT
LNGGALQKGACKTLPDVGNGLIPTPLVEEFITPKPPTTVSWNRHNNSLSN
RLNYVQNDEKDSKSMLWIIVGSCISFLVLTIAVVFVVRHVMKKRQERHRQ
YRDHYLRQTAMRIEQEDLLPTEQKCIREEIAKRKLQTFSPLRKDFYVSSS
SHAGSLPRSVHHEPIYQSHEVFHHAHPCLGKNYAVPSIQEQPGQNCPSPV
SSHYGISRKCSHSSSVRYQTPNVKPAESIKSFSSQQS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041680XLOC_041680Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066637TCONS_00066637Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001791Laminin_G
IPR000742EGF-like_dom
IPR013320ConA-like_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
ZOOM
x 1
POSITION
0
100200300400500600Score = 26.331Score = 22.854Expect = 2.6E-23 / Score = 82.1Expect = 3.2E-23 / Score = 82.1Score = Score = SequenceSM00282PF02210PS50025PS50025G3DSA:1.20.5.900G3DSA:2.60.120.200G3DSA:2.10.25.10G3DSA:2.60.120.200mobidb-litecd00110cd00110PS50026SSF49899SSF49899
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001791Laminin G domainSMARTSM00282LamG_3coord: 287..432
e-value: 2.1E-12
score: 57.2
coord: 55..202
e-value: 1.3E-13
score: 61.2
IPR001791Laminin G domainPFAMPF02210Laminin_G_2coord: 76..199
e-value: 1.5E-13
score: 51.3
coord: 295..431
e-value: 1.7E-13
score: 51.2
IPR001791Laminin G domainPROSITEPS50025LAM_G_DOMAINcoord: 35..222
score: 26.331
IPR001791Laminin G domainPROSITEPS50025LAM_G_DOMAINcoord: 265..461
score: 22.854
NoneNo IPR availableGENE3D1.20.5.900coord: 513..560
e-value: 3.3E-5
score: 23.2
NoneNo IPR availableGENE3D2.60.120.200coord: 255..447
e-value: 2.6E-23
score: 82.1
NoneNo IPR availableGENE3D2.10.25.10coord: 228..254
e-value: 0.0019
score: 17.8
NoneNo IPR availableGENE3D2.60.120.200coord: 32..227
e-value: 3.2E-23
score: 82.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 663..687
NoneNo IPR availableCDDcd00110LamGcoord: 267..430
e-value: 1.40046E-17
score: 79.3844
NoneNo IPR availableCDDcd00110LamGcoord: 37..199
e-value: 1.95675E-15
score: 73.2212
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 223..262
score: 9.399
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 33..226
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 234..430

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066637-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
CFRTENFTLVFIKSKGKMKTILLINALFLVNICHGVTYTYPGKGFTKFPILKSSQTTKISFEFQTSSTREEINILYVDDVENGGKSGDYLRVTLERGRLNVHWDVSNGNYRDGDTKVIGHNLDDNIKHYVVIESYNGKDFLVRVDGGDVQSKSFSKAVRFNSEVYLGGCHPDPTKRTLQRDPYFCFQNGFIGCISNLRWSTERGEPEQIVHPIESDNVAKGCTNRCLTDPSFSCSNRGRCLNQYIKTGCDCRGTGFTGTTCQKPKQAVTFFGEQYVTWVPQTSMNSLVTDIFVRFKSNQPSGIILFITGQSTSEFMLLELHKGTLILKTKINGYDEKVFKIPKSMNEKASNWRMVSFSRMGASTTISMDDGLYEYTNSVKRLENKVVQVKFIINKIYFGGVDKLQDGDFALRKSDSKINFIGCLQNIDINQFELIGKITNSSSINDKSITLNGGALQKGACKTLPDVGNGLIPTPLVEEFITPKPPTTVSWNRHNNSLSNRLNYVQNDEKDSKSMLWIIVGSCISFLVLTIAVVFVVRHVMKKRQERHRQYRDHYLRQTAMRIEQEDLLPTEQKCIREEIAKRKLQTFSPLRKDFYVSSSSHAGSLPRSVHHEPIYQSHEVFHHAHPCLGKNYAVPSIQEQPGQNCPSPVSSHYGISRKCSHSSSVRYQTPNVKPAESIKSFSSQQS100200300400500600Expect = 1.66e-19 / Id = 21.70Expect = 6.82e-18 / Id = 21.70SequenceNRX1A
Match NameE-valueIdentityDescription
NRX1A1.664e-1921.70Neurexin-1 OS=Homo sapiens GN=NRXN1 PE=2 SV=1[more]
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