TCONS_00066579-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00066579-protein
Unique Name	TCONS_00066579-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	502

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00066579-protein ID=TCONS_00066579-protein|Name=TCONS_00066579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=502bp
MANPFDFNEDEASRNFEKSVIFGNTGTSPRGSEARDFMKTSLAAANMLHD
EDVNDDFSSISLSVRGSAAYSNNKKQQRPPPKYNTADLLNALDADYPDGK
RSHSNISKEQSYMGLDDHVHNKPQVSAVEFQRISEELRNAKRTIENMKSE
KWKSPPVRETVHRMVTGKDYFLEGYKALNQKQELLSSTVRTNDGNAIINV
VLFLAKTLKPSLFIRELRKQTSAFSHYAFYLRQNEEWDRLENLYHEMCMV
EDAATVRYEQICQEETETVSKVQALQNWIRDYGLKQEVTDMSSYIKDEIS
LLEKQRQIDEEDKKRFMQNANTAQAGSTEPVIQPQVPKVTGRPLITTISY
CARYHFDNKSSRYYPEHFKKTYQLTDKQYEWAVLPPRINLRRWNDVQELL
TSTSWLKKKSESSAIGFEHVCAILHKANADAEILNKYLFLIGNADLRIKH
ASKFNAHHVVIETLVQTRDRDSMEAYRLKVGQQSQYRQKINDLLNNTSIK
WR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041636	XLOC_041636	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00066579	TCONS_00066579	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006925	Vps16_C

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0006886	intracellular protein transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0005737	cytoplasm

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 130..150
IPR006925	Vps16, C-terminal	PFAM	PF04840	Vps16_C	coord: 178..316 e-value: 3.8E-7 score: 29.4

Blast

[Close]

BLAST of TCONS_00066579-protein vs. Swiss-Prot (Human)
Match: SPE39 (Spermatogenesis-defective protein 39 homolog OS=Homo sapiens GN=VIPAS39 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.613e-46
Identity = 141/452 (31.19%), Postives = 221/452 (48.89%), Query Frame = 0

Query:   58 SSISLSVRGSAAYSNNKKQQRPPPKYNTADLLNALDADYPDGKRSHSNI----SKEQSYMGLDDHVHNKPQVS-AVEFQRISEELRNAKRTIENMKSEKWKSPPVRETVHRMVTGKDYFLEGYKALNQKQELLSSTVRTNDGNAIINVVLFLAKTLKPSLFIRELRKQTSAFSHYAFYLRQNEEWDRLENLYHEMCMVEDAATVRYEQICQEETETVSKVQALQNWIRDYGLKQEVTDMSSYIKDEISLLEKQRQIDEEDKKRFMQNANTAQAGSTEPVIQ-PQVPKVTGRPLITTISYCARYHFDNKSSRYY-PEHFKKTYQLTDKQYEWAVLPPRINLRRWNDVQELLTSTSWLKKKSESSAIGFEHVCAILHKANADAEILNKYLFLIGNADLRIKHASKFNAHHVVIETLVQTRDRDSMEAYRLKVGQQSQYRQKINDLLNNTSIKWR 502
             SIS S+R +A  S +  + R   K   +   +      P    S S+     ++  S+  L D + + P  S A E  R   E R+         S  W SP   +TV R+  GK   LE +++L  K +LL   V  +DGN I  V++FL +TL   +  REL  +  A  H   +L++  +   L +L+  +   E+ A   Y +    +     K + L+  +   GL     D S++I+D  +LLE+Q  I+  D+       +   AG TE   + P+   +   PL+TT+ Y   YH+      +  P + KKT+++ DKQY    L  R  LR WNDV  L T+ +WL    + + IGF  V  ILHK NA  +IL +Y+ L+ + D ++  A+KF  H VVI+T    +DR  + AYR KV + S   +KI+ LL+++ I+W+
Sbjct:   65 GSISWSIRETAGNSGSTHEGREQLKSRNS-FSSYAQLPKPTSTYSLSSFFRGRTRPGSFQSLSDALSDTPAKSYAPELGRPKGEYRDY--------SNDW-SPS--DTVRRLRKGKVCSLERFRSLQDKLQLLEEAVSMHDGNVITAVLIFLKRTLSKEILFRELEVRQVALRHLIHFLKEIGDQKLLLDLFRFLDRTEELALSHYREHLNIQDPDKRK-EFLKTCV---GLPFSAED-SAHIQDHYTLLERQIIIEANDR-------HLESAGQTEIFRKHPRKASILNMPLVTTLFYSCFYHYTEAEGTFSSPVNLKKTFKIPDKQYVLTALAARAKLRAWNDVDALFTTKNWLGYTKKRAPIGFHRVVEILHKNNAPVQILQEYVNLVEDVDTKLNLATKFKCHDVVIDTYRDLKDRQQLLAYRSKVDKGSAEEEKIDALLSSSQIRWK 492

The following BLAST results are available for this feature:

BLAST of TCONS_00066579-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00066579-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
SPE39	5.613e-46	31.19	Spermatogenesis-defective protein 39 homolog OS=Ho...	[more]

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TCONS_00066579-protein (polypeptide) - C. hemisphaerica

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