Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00066531-protein ID=TCONS_00066531-protein|Name=TCONS_00066531-protein|organism=Clytia hemisphaerica|type=polypeptide|length=978bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
Term Definition
GO:0005515 protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0005515 protein binding
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
100 200 300 400 500 600 700 800 900 Expect = 89.0 / Score = 6.5 Expect = 560.0 / Score = 0.4 Expect = 57.0 / Score = 7.9 Expect = 95.0 / Score = 6.2 Expect = 32.0 / Score = 9.9 Expect = 320.0 / Score = 2.3 Expect = 32.0 / Score = 11.5 Expect = 0.37 / Score = 19.8 Expect = 190.0 / Score = 5.1 Expect = 440.0 / Score = 2.2 Score = Score = Score = Expect = 6.8E-4 / Score = 18.1 Expect = 2.4E-19 / Score = 68.4 Expect = 1.8E-10 / Score = 39.6 Score = Score = 5.579 Score = 6.518 Score = 6.218 Score = 6.411 Score = 7.712 Score = 7.712 Score = 7.835 Score = 8.775 Score = 8.517 Sequence SM00364 SM00365 mobidb-lite mobidb-lite mobidb-lite G3DSA:3.80.10.10 G3DSA:3.80.10.10 SSF52058 PS51450 PS51450 PS51450 PS51450 PS51450 PS51450 PS51450 PS51450 PS50096
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available SMART SM00364 LRR_bac_2 coord: 305..324 None No IPR available SMART SM00365 LRR_sd22_2 coord: 393..414 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 908..978 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 859..879 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 127..156 IPR032675 Leucine-rich repeat domain, L domain-like GENE3D 3.80.10.10 coord: 187..288 IPR032675 Leucine-rich repeat domain, L domain-like GENE3D 3.80.10.10 coord: 382..547 IPR032675 Leucine-rich repeat domain, L domain-like SUPERFAMILY 52058 L domain-like coord: 227..489 IPR001611 Leucine-rich repeat PROSITE PS51450 LRR coord: 373..394 IPR001611 Leucine-rich repeat PROSITE PS51450 LRR coord: 419..440 IPR001611 Leucine-rich repeat PROSITE PS51450 LRR coord: 441..462 IPR001611 Leucine-rich repeat PROSITE PS51450 LRR coord: 395..416 IPR001611 Leucine-rich repeat PROSITE PS51450 LRR coord: 329..350 IPR001611 Leucine-rich repeat PROSITE PS51450 LRR coord: 351..372 IPR001611 Leucine-rich repeat PROSITE PS51450 LRR coord: 307..328 IPR001611 Leucine-rich repeat PROSITE PS51450 LRR coord: 285..306 IPR000048 IQ motif, EF-hand binding site PROSITE PS50096 IQ coord: 598..627
Blast
BLAST of TCONS_00066531-protein vs. Swiss-Prot (Human)
Match:
LRIQ1 (Leucine-rich repeat and IQ domain-containing protein 1 OS=Homo sapiens GN=LRRIQ1 PE=2 SV=3)
HSP 1 Score: 90.1225 bits (222), Expect = 4.054e-18
Identity = 56/158 (35.44%), Postives = 86/158 (54.43%), Query Frame = 0
Query: 323 GIEECRNMVYLNLDNNQLISLKGLGHLSKLSWLSLRHNDVTSLPEISLCRRLVKLDVTENNLIEVPQFEDNALLTSLSLDSNTIQHLDGMADCWLPLLIIISASNNRLEDVSPLFNLPHLLQLNVKGNLISNLNN-ISTRENVPFLQQICLVDNPVLE 479
G+E +N+ L LD+NQLI+ KGL + +L HN +T + + C L L + N L E+P E+ LL L LD N+I ++ + WLPLL I+ S N L + PLF+ L +L+V N +S+L + I + L ++ L NP+L+
Sbjct: 964 GLESLKNLQQLILDHNQLINTKGLCDTPTIVYLDCSHNHLTDVEGVENCGLLQILKLQGNYLSELPSLENLVLLRELHLDDNSISTVEAFSSYWLPLLQNITISQNSLTKIVPLFHFVSLEKLDVSHNCLSDLKSAIKWFDACYSLHELSLTGNPLLQ 1121
The following BLAST results are available for this feature:
