Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00066517-protein ID=TCONS_00066517-protein|Name=TCONS_00066517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=411bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
Term Definition
GO:0003676 nucleic acid binding GO:0003723 RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0003676 nucleic acid binding
molecular_function
GO:0003723 RNA binding
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
50 100 150 200 250 300 350 400 Score = Score = Score = 19.246 Score = 15.116 Score = 15.305 Expect = 2.28088E-15 / Score = 69.4275 Expect = 5.40123E-15 / Score = 68.2719 Expect = 5.0E-7 / Score = 39.3 Expect = 2.2E-15 / Score = 67.1 Expect = 1.6E-11 / Score = 54.3 Expect = 7.1E-19 / Score = 66.9 Expect = 1.3E-13 / Score = 50.1 Expect = 1.4E-11 / Score = 44.0 Expect = 7.7E-17 / Score = 60.8 Expect = 1.2E-12 / Score = 47.4 Expect = 3.0E-15 / Score = 55.2 Score = Score = Score = Sequence Coil mobidb-lite PS50084 PS50084 PS50084 cd02396 cd02396 SM00322 G3DSA:3.30.1370.10 G3DSA:3.30.1370.10 PF00013 G3DSA:3.30.1370.10 SSF54791 SSF54791 SSF54791
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 197..217 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 14..45 None No IPR available PROSITE PS50084 KH_TYPE_1 coord: 137..204 None No IPR available PROSITE PS50084 KH_TYPE_1 coord: 326..393 None No IPR available PROSITE PS50084 KH_TYPE_1 coord: 48..115 None No IPR available CDD cd02396 PCBP_like_KH coord: 140..199 None No IPR available CDD cd02396 PCBP_like_KH coord: 51..110 IPR004087 K Homology domain SMART SM00322 kh_6 coord: 136..209 IPR004088 K Homology domain, type 1 GENE3D 3.30.1370.10 coord: 128..267 IPR004088 K Homology domain, type 1 GENE3D 3.30.1370.10 coord: 50..122 IPR004088 K Homology domain, type 1 PFAM PF00013 KH_1 coord: 140..204 IPR004088 K Homology domain, type 1 GENE3D 3.30.1370.10 coord: 317..404 IPR004088 K Homology domain, type 1 SUPERFAMILY 54791 Eukaryotic type KH-domain (KH-domain type I) coord: 51..118 IPR004088 K Homology domain, type 1 SUPERFAMILY 54791 Eukaryotic type KH-domain (KH-domain type I) coord: 140..232 IPR004088 K Homology domain, type 1 SUPERFAMILY 54791 Eukaryotic type KH-domain (KH-domain type I) coord: 326..400
Blast
BLAST of TCONS_00066517-protein vs. Swiss-Prot (Human)
Match:
NOVA1 (RNA-binding protein Nova-1 OS=Homo sapiens GN=NOVA1 PE=1 SV=1)
HSP 1 Score: 173.326 bits (438), Expect = 6.942e-49
Identity = 137/464 (29.53%), Postives = 226/464 (48.71%), Query Frame = 0
Query: 50 LLKILIPNYAAGAIIGKGGTNIGDLQSQYGAKIRLSP---SREFYPGTEERIVVLTGEVNQIIDLNNYIIDKV-----HIDATEGPGAKLRDE-----------------------------ERGQKVKIVVPNATAGLVIGRGGSTIKALQEETGAKIMISGRDEAKVPGERIITISGNTDQRIEAAQKVVAKVAADAENMANKNLTYS--------STQVRNGYGNKHLEMGPVT-----------LGGVSSLQSVIGSLQSQH--SMKTSQNILSSIAQNPISALQQSGLA-------------------------------NQLGLSSTMSGLTAGIPGTTSLAALTGATT--------------MGSLVASIKTQVTIQMEIPDILVGAILGKQGKTVHEFIQFSGAKIQFSAKNDFAPGTTDRILTIQGDVNQTQIAYFLINQKIVQAESELASGIQR 410
LK+LIP+YAAG+IIGKGG I LQ + GA I+LS S++FYPGT ER+ ++ G V + ++ +I +K+ ++ TE P + L+ + R +VKI+VPN+TAGL+IG+GG+T+KA+ E++GA + +S + + ER++T+SG +Q +A + ++ K+ D ++ + N++Y+ S + Y N E+ P L GV++ +V+ ++ ++ N L+S N L GL ++ S + +G TAG SLAA T AT +G+ ++ ++ +++ +P+ LVGAILGK GKT+ E+ + +GA+IQ S K +F PGT +R +TI G TQ A +LI Q+I + A+ Q+
Sbjct: 51 FLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTE-PVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTA-EVLPTAAAAAGLLGHANLAGVAAFPAVLSGFTGNDLVAITSALNTLASYGYN----LNTLGLGLSQAAATGALAAAAASANPAAAAANLLATYASEASASGSTAGGTAGTFALGSLAAATAATNGYFGAASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRITYEQGVRAANPQK 508
The following BLAST results are available for this feature:
BLAST of TCONS_00066517-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
M N L L N M A D V L E N N V F S T R K R S H T E S T E T N E N D R P R S K R Q S P T S S T E A L P L L K I L I P N Y A A G A I I G K G G T N I G D L Q S Q Y G A K I R L S P S R E F Y P G T E E R I V V L T G E V N Q I I D L N N Y I I D K V H I D A T E G P G A K L R D E E R G Q K V K I V V P N A T A G L V I G R G G S T I K A L Q E E T G A K I M I S G R D E A K V P G E R I I T I S G N T D Q R I E A A Q K V V A K V A A D A E N M A N K N L T Y S S T Q V R N G Y G N K H L E M G P V T L G G V S S L Q S V I G S L Q S Q H S M K T S Q N I L S S I A Q N P I S A L Q Q S G L A N Q L G L S S T M S G L T A G I P G T T S L A A L T G A T T M G S L V A S I K T Q V T I Q M E I P D I L V G A I L G K Q G K T V H E F I Q F S G A K I Q F S A K N D F A P G T T D R I L T I Q G D V N Q T Q I A Y F L I N Q K I V Q A E S E L A S G I Q R H 50 100 150 200 250 300 350 400 Expect = 6.94e-49 / Id = 29.53 Sequence NOVA1
Match Name E-value Identity Description
NOVA1 6.942e-49 29.53 RNA-binding protein Nova-1 OS=Homo sapiens GN=NOVA... [more]
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