TCONS_00066210-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00066210-protein
Unique Name	TCONS_00066210-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	600

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00066210-protein ID=TCONS_00066210-protein|Name=TCONS_00066210-protein|organism=Clytia hemisphaerica|type=polypeptide|length=600bp
MVSSAGGFANLKLKKALKQTTLDTLGILGFDQPTPVQATCIPLILSNKDV
VAEAVTGSGKTLAFLIPVIGMLQNREEKLKKHDIGALILSPTRELAIQIN
NVLNPFLEKISFTSNLIVGGKSKEDPVKKFNEEGGHIIVATPGKFAKMVK
DTKTGELFQKGLKALEILILDEADRFFQQANFREDLQNILAFVPKQRRTS
LFSATQTTEIESFIRAGLRNPVQVVVREKRAQNVIKRTPDSLSNFYFVCE
ADLKLQRLVALLRQHRDEKFIIFFNTCACVDYFTKLLAILLKNIPILSIH
GQKVKRAEVFNKFQDIKHGILTCTDVMARGIDIPTVDWVIQYDPPSNVEA
FVHRCGRTARMGNIGKALLLLLPSEVAYIDFVKINQKVQIDEYEGQNIID
DSYSMSHKIRKIAAKDREVYEKGLRAFVSFIQSYIKHQCNIVLQMKELDI
CKLGYGFGLLHLPKMPELKEKDLNGFETMDVDTTLIKYQDKAREKARLER
VEKEMEAAKEKAIEKAKFKASQQTRKSDSWSRQKEKKMKKNERKEKQTLK
RKLKDDGDDDVDDVDDLMKEGRLLKKLKKGKITEKQYQERTNEEELLSDS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041433	XLOC_041433	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00066210	TCONS_00066210	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001650	Helicase_C
IPR025313	DUF4217
IPR014001	Helicase_ATP-bd
IPR011545	DEAD/DEAH_box_helicase_dom
IPR000629	RNA-helicase_DEAD-box_CS
IPR014014	RNA_helicase_DEAD_Q_motif
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0005524	ATP binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 532..556
None	No IPR available	COILS	Coil	Coil	coord: 488..515
None	No IPR available	GENE3D	3.40.50.300		coord: 241..593 e-value: 3.7E-43 score: 147.2
None	No IPR available	GENE3D	3.40.50.300		coord: 8..240 e-value: 4.8E-46 score: 156.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 513..565
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 578..600
None	No IPR available	CDD	cd00079	HELICc	coord: 242..370 e-value: 3.68185E-28 score: 108.864
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 281..362 e-value: 5.7E-25 score: 99.0
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 254..362 e-value: 9.3E-24 score: 83.8
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 254..410 score: 17.764
IPR025313	Domain of unknown function DUF4217	SMART	SM01178	DUF4217_3	coord: 404..467 e-value: 2.1E-21 score: 87.1
IPR025313	Domain of unknown function DUF4217	PFAM	PF13959	DUF4217	coord: 407..465 e-value: 1.2E-16 score: 60.6
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 29..245 e-value: 9.5E-45 score: 164.7
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 41..224 score: 26.435
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 34..211 e-value: 3.3E-41 score: 140.9
IPR000629	ATP-dependent RNA helicase DEAD-box, conserved site	PROSITE	PS00039	DEAD_ATP_HELICASE	coord: 169..177
IPR014014	RNA helicase, DEAD-box type, Q motif	PROSITE	PS51195	Q_MOTIF	coord: 6..38 score: 7.906
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 85..379

Blast

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BLAST of TCONS_00066210-protein vs. Swiss-Prot (Human)
Match: DDX55 (ATP-dependent RNA helicase DDX55 OS=Homo sapiens GN=DDX55 PE=1 SV=3)

HSP 1 Score: 516.153 bits (1328), Expect = 1.007e-177
Identity = 280/580 (48.28%), Postives = 400/580 (68.97%), Query Frame = 0

Query:   13 LKKALKQTTLDTLGILGFDQPTPVQATCIPLILSNKDVVAEAVTGSGKTLAFLIPVIGMLQNREEKLKKHDIGALILSPTRELAIQINNVLNPFLEKIS-FTSNLIVGGKSKEDPVKKFNEEGGHIIVATPGKFAKMVKDTKTGELFQKGLKALEILILDEADRFFQQANFREDLQNILAFVPKQRRTSLFSATQTTEIESFIRAGLRNPVQVVVREKR-AQNVIKRTPDSLSNFYFVCEADLKLQRLVALLRQHRDEKFIIFFNTCACVDYFTKLLAILLKNIPILSIHGQ-KVKRAEVFNKFQDIKHGILTCTDVMARGIDIPTVDWVIQYDPPSNVEAFVHRCGRTARMGNIGKALLLLLPSEVAYIDFVKINQKVQIDEYEGQNIIDDSYSMSHKIRKIAAKDREVYEKGLRAFVSFIQSYIKHQCNIVLQMKELDICKLGYGFGLLHLPKMPELKEKDLNGFETMDVDTTLIKYQDKAREKARLERVEKEMEAAKEKAIEKAKFKASQQTRKSDSWSRQKEKKMKKNERKEKQTLKRKLKDDGDDDVD-DVDDLMKEGRLLKKLKKGKITEKQYQ 588
            L   L    L  L  LGF   TPVQ+  IPL + NKDV AEAVTGSGKTLAF+IP++ +L  REEKLKK  +GA+I++PTRELAIQI+ VL+ F +    F+  L +GG++  + V++F ++GG+IIVATPG+   M +    G      +++L++L+LDEADR      F   +  IL F+PKQRRT LFSATQT E+E+ +RAGLRNPV+V V+EK  A +  ++TP  L N+Y VC+AD K  +LV  LR H+ EK ++FF+TCACV+Y+ K L +L+K + I+ IHG+ K KR ++F +F+ ++ GIL CTDVMARGIDIP V+WV+QYDPPSN  AFVHRCGRTAR+G+ G AL+ LLP E +YI+F+ INQK  + E + Q    ++  +  K++ +A  DR V+EKG++AFVS++Q+Y KH+CN++ ++K+LD   L  GF LL +PKMPEL+ K    F  +DV+T  I ++DK REK R + +E++         EK + +  ++  K+ +WS+QK KK KK +  EK+      +++G D  D D+++L+ + RLLKKLKKGKITE++++
Sbjct:   12 LPVPLHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMG-FEASINTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEVLVKGVKIMCIHGKMKYKRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEESYINFLAINQKCPLQEMKPQR---NTADLLPKLKSMALADRAVFEKGMKAFVSYVQAYAKHECNLIFRLKDLDFASLARGFALLRMPKMPELRGKQFPDFVPVDVNTDTIPFKDKIREKQRQKLLEQQRR-------EKTENEGRRKFIKNKAWSKQKAKKEKKKKMNEKRK-----REEGSDIEDEDMEELLNDTRLLKKLKKGKITEEEFE 575

The following BLAST results are available for this feature:

BLAST of TCONS_00066210-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00066210-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
DDX55	1.007e-177	48.28	ATP-dependent RNA helicase DDX55 OS=Homo sapiens G...	[more]

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TCONS_00066210-protein (polypeptide) - C. hemisphaerica

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