Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00066099-protein ID=TCONS_00066099-protein|Name=TCONS_00066099-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp
MEIQEQRHPDPAMPISQQLKFECNGNCHRFSHHHKQILPQQNSHCNCRNK
KIQSLSRSTNHHLIQNSKEVPGEESNTLRNTDKEKPSDSLTTMPRTPETA
PSDSKMTVQLSQQLAVERKRNDELCLRIEQLQITLESADINYEILKQKFM
EQFQTFQDELNILKRNYHKHTESGPNSPSLGRRRRAINTVSEQQNELKIL
TNTVEENTRNIDDIDLRLQIHENTRYNGRILWKIDDFHSRRQQVLSGELH
ALHSAPCYSSDYGYKFCLRAYLNGDGVGEGTHVSLFLVVMKSDHDRVLEW
PFQKKVKMTLINQQNRRRDHTEVMTPNKDSASFQRPKNDTNVASGCPLFM
ALDRLDAEGFVKEDVLFFDVTVE Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 183..210 |
| None | No IPR available | COILS | Coil | Coil | coord: 121..166 |
| None | No IPR available | GENE3D | 1.20.5.50 | | coord: 83..216
e-value: 0.0013
score: 17.9 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 316..337 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 67..107 |
| IPR002083 | MATH/TRAF domain | SMART | SM00061 | math_3 | coord: 232..355
e-value: 5.0E-10
score: 49.3 |
| IPR002083 | MATH/TRAF domain | PROSITE | PS50144 | MATH | coord: 227..372
score: 17.425 |
| IPR008974 | TRAF-like | GENE3D | 2.60.210.10 | | coord: 217..373
e-value: 1.8E-33
score: 115.2 |
| IPR008974 | TRAF-like | SUPERFAMILY | 49599 | TRAF domain-like | coord: 226..372 |
Blast
BLAST of TCONS_00066099-protein vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2) HSP 1 Score: 176.792 bits (447), Expect = 3.120e-50 Identity = 80/234 (34.19%), Postives = 137/234 (58.55%), Query Frame = 0 Query: 151 EQFQTFQDELNILKRNYHKHTESGPNSPSLGRRRRAINTVSEQQNELKILTNTVEENTRNID-----------DIDLRLQIHENTRYNGRILWKIDDFHSRRQQVLSGELHALHSAPCYSSDYGYKFCLRAYLNGDGVGEGTHVSLFLVVMKSDHDRVLEWPFQKKVKMTLINQQNRRRDHTEVMTPNKDSASFQRPKNDTNVASGCPLFMALDRLDAEGFVKEDVLFFDVTVE 373
E+ + E+ ++N+ + + SL R + +V + ++ T +E D D+DLR Q+ E YNG ++WKI D+ R+Q+ + G+ +L+S P Y+ +GYK C R YLNGDG+G+GTH+SLF V+M+ ++D +L WPF++KV + L++Q + RR + P+ +S+SF++P + N+ASGCP+F+A L+ ++K+D +F V V+
Sbjct: 328 EKLKELDKEIRPFRQNWEEADSMKSSVESLQNRVTELESVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 561
The following BLAST results are available for this feature:
BLAST of TCONS_00066099-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 ( Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| TRAF3 | 3.120e-50 | 34.19 | TNF receptor-associated factor 3 OS=Homo sapiens G... | [more] |
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