TCONS_00065978-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065978-protein
Unique NameTCONS_00065978-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length554

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065978-protein ID=TCONS_00065978-protein|Name=TCONS_00065978-protein|organism=Clytia hemisphaerica|type=polypeptide|length=554bp
MMLQRAKPALGPGAAPQKETKKKKKLPKLEDFLQARDYTGAITLLEFTRN
AGKNSEEIALWIAYCAFHLGDFKKSMDEYHNLMKKENFHQDIFQNLACCY
FMMGMYQDSQESLDKAKNSKLSNRLLFHLSHKFNDESKLMGFHSKLQDVV
EDQLSLASIHYLRSHFQESIDIYKRILLDNREYAALNVYVALCYYKLDYF
DVSQEVLSVYLQSYPDSAIAINLKACNHFKLYNGKAAEAELKALQEITTS
SFDYAKDLIKHNLVVFRNGEGALQVLPPILDVLPEARLNLVVYYLRQDDI
KEAFNLIKDVEPTSPNEYILKGVVNAVLGQDQGSREHLKIAQQYFQLVGG
SASECDTIHGRQCMASCFFLLKQFEDVLIYFNSIKSYFYNDDSFNFNYGQ
AKAANGNFKEAEEVFLLIQNEKIKNDYIYISWIARCYIMNRKARLAWELY
LKMETSSESFSLLQLIANDCYKMGQFYYAAKAFDVLERLDPNPEYWEGKR
GACVGIFQMIIAGHEPRETLRDVLQLLRNTANPQVEYIIRTMKKWAKDNR
VPVA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041325XLOC_041325Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065978TCONS_00065978Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 408..505
e-value: 1.9E-6
score: 27.0
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 15..135
e-value: 1.2E-9
score: 37.4
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 351..407
e-value: 0.0083
score: 15.6
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 151..251
coord: 284..343
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 32..118
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 312..493
NoneNo IPR availablePFAMPF13432TPR_16coord: 31..76
e-value: 0.014
score: 15.9
NoneNo IPR availableGENE3D1.25.40.120coord: 136..349
e-value: 1.2E-13
score: 50.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Blast
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BLAST of TCONS_00065978-protein vs. Swiss-Prot (Human)
Match: IFT56 (Intraflagellar transport protein 56 OS=Homo sapiens GN=TTC26 PE=1 SV=1)

HSP 1 Score: 904.434 bits (2336), Expect = 0.000e+0
Identity = 419/554 (75.63%), Postives = 485/554 (87.55%), Query Frame = 0 
Query:    1 MMLQRAKPALGPGAA-PQKETKKKKKLPKLEDFLQARDYTGAITLLEFTRNAGKNSEEIALWIAYCAFHLGDFKKSMDEYHNLMKKENFHQDIFQNLACCYFMMGMYQDSQESLDKAKNSKLSNRLLFHLSHKFNDESKLMGFHSKLQDVVEDQLSLASIHYLRSHFQESIDIYKRILLDNREYAALNVYVALCYYKLDYFDVSQEVLSVYLQSYPDSAIAINLKACNHFKLYNGKAAEAELKALQEITTSSFDYAKDLIKHNLVVFRNGEGALQVLPPILDVLPEARLNLVVYYLRQDDIKEAFNLIKDVEPTSPNEYILKGVVNAVLGQDQGSREHLKIAQQYFQLVGGSASECDTIHGRQCMASCFFLLKQFEDVLIYFNSIKSYFYNDDSFNFNYGQAKAANGNFKEAEEVFLLIQNEKIKNDYIYISWIARCYIMNRKARLAWELYLKMETSSESFSLLQLIANDCYKMGQFYYAAKAFDVLERLDPNPEYWEGKRGACVGIFQMIIAGHEPRETLRDVLQLLRNTANPQVEYIIRTMKKWAKDNRVPV 553
            MML RAKPA+G G     K  KK +K+PKLE+ L  RD+TGAITLLEF R+ G+  E+  LWI YCAFHLGD+K++++EY N  K+EN + +++ NLAC YF +GMY+ ++ +  KA  S+L NRLLFHL+HKFNDE KLM FH  LQDV EDQLSLASIHY+RSH+QE+IDIYKRILLDNREY ALNVYVALCYYKLDY+DVSQEVL+VYLQ  PDS IA+NLKACNHF+LYNG+AAEAELK+L +  +SSF++AK+LI+HNLVVFR GEGALQVLPP++DV+PEARLNLV+YYLRQDD++EA+NLIKD+EPT+P EYILKGVVNA LGQ+ GSR+H+KIAQQ+FQLVGGSASECDTI GRQCMASCFFLLKQF+DVLIY NS KSYFYNDD FNFNY QAKAA GN  E EE FLLIQ+EK+KNDYIY+SW+ARCYIMN+K RLAWELYLKMETS ESFSLLQLIANDCYKMGQFYY+AKAFDVLERLDPNPEYWEGKRGACVGIFQMIIAG EP+ETLR+VL LLR+T N QVEY+IR MKKWAK+NRV +
Sbjct:    1 MMLSRAKPAVGRGVQHTDKRKKKGRKIPKLEELLSKRDFTGAITLLEFKRHVGEEEEDTNLWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEAAGFKASKSRLQNRLLFHLAHKFNDEKKLMSFHQNLQDVTEDQLSLASIHYMRSHYQEAIDIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLKACNHFRLYNGRAAEAELKSLMDNASSSFEFAKELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEAFLLIQSEKMKNDYIYLSWLARCYIMNKKPRLAWELYLKMETSGESFSLLQLIANDCYKMGQFYYSAKAFDVLERLDPNPEYWEGKRGACVGIFQMIIAGREPKETLREVLHLLRSTGNTQVEYMIRIMKKWAKENRVSI 554
The following BLAST results are available for this feature:
BLAST of TCONS_00065978-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IFT560.000e+075.63Intraflagellar transport protein 56 OS=Homo sapien... [more]
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