TCONS_00065940-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00065940-protein
Unique Name	TCONS_00065940-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	594

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00065940-protein ID=TCONS_00065940-protein|Name=TCONS_00065940-protein|organism=Clytia hemisphaerica|type=polypeptide|length=594bp
MAEVVYRNLEQILPELQELEKQEVFTKEELRIATKRRTDFEYKLQKKVMK
KQDALNYIEYEMKFEKLMSKRMKRLKLHPFSPATINLQRRIHSLFDKVLM
KFGDDLNIWTQYINFCKRAKAKKSLAKVFAKLLQKHPHNPDVWLLAAKYE
IEDQKNVDNARSILQKGLRQNNESSILWLEYFKMELLHVRKIKKRKEALG
IGGIDLKETEEGEPKEIEIFLQNKTAEIVYKNAIKKIPGDFKFRMQFLEV
CLEFDDTENLITNILTNTEEDFRTTENIFEIILKKNILQNNKKIIPDDVW
LERESNILQTSREILTQHKSNCRMWESFLNILGELLKLSATSTQTNRRVK
YIQELMSDASSHCVLTCSMACFWLDLVVDVEENPLPIIQKYVDIFPQEPQ
IALKFLAAKAEVTDDWEELKKLFQRTLKTFKKGDLAIWQLYLDLAAMMEF
DQCQNVFEEACFSSRKDVRYQFASKYLIWLYESKGLDDTRQLYQRLFTER
MPIEFLQNCVQVESIQEKIDLKRLRHLHEKLVDYHGTENPDLWIEYIRCE
KKHNGTDIESASRLFMRAKNSLKGNLNEEFLVKHAELLRETRRS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041311	XLOC_041311	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00065940	TCONS_00065940	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003107	HAT
IPR011990	TPR-like_helical_dom
IPR013949	Utp6

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0030515	snoRNA binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006396	RNA processing
molecular_function	GO:0005515	protein binding
molecular_function	GO:0030515	snoRNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 16..36
IPR003107	HAT (Half-A-TPR) repeat	SMART	SM00386	hat_new_1	coord: 519..552 e-value: 0.27 score: 20.3 coord: 414..447 e-value: 91.0 score: 8.4 coord: 556..590 e-value: 920.0 score: 1.0 coord: 155..187 e-value: 0.15 score: 21.2 coord: 86..118 e-value: 0.23 score: 20.5 coord: 120..152 e-value: 0.042 score: 23.0
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 40..199 e-value: 7.5E-12 score: 44.7 coord: 310..592 e-value: 8.9E-7 score: 28.2
IPR011990	Tetratricopeptide-like helical domain	SUPERFAMILY	48452	TPR-like	coord: 35..243
IPR011990	Tetratricopeptide-like helical domain	SUPERFAMILY	48452	TPR-like	coord: 267..584
IPR013949	U3 small nucleolar RNA-associated protein 6	PFAM	PF08640	U3_assoc_6	coord: 9..81 e-value: 9.9E-22 score: 76.7

Blast

[Close]

BLAST of TCONS_00065940-protein vs. Swiss-Prot (Human)
Match: UTP6 (U3 small nucleolar RNA-associated protein 6 homolog OS=Homo sapiens GN=UTP6 PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 5.250e-50
Identity = 160/629 (25.44%), Postives = 291/629 (46.26%), Query Frame = 0

Query:    1 MAEVVYRNLEQILPELQELEKQEVFTKEELRIATKRRTDFEYKLQKKVMKKQDALNYIEYEMKFEKLMSKRMKRLKLHPFSPATI--NLQRRIHSLFDKVLMKFGDDLNIWTQYINFCKRAKAKKSLAKVFAKLLQKHPHNPDVWLLAAKYEIEDQKNVDNARSILQKGLRQNNESSILWLEYFKMELLHVRKIKKRKEALGIGGIDLKETEEGEPKEIEIFLQNKTAEIVYKNAIKKIPGDFKFRMQFLEVCLEFDDTENLITNILTNTEEDFRTTENIFEIILKKNI-LQNNKKIIPDD-----VWLERESNILQTSREILTQHKSNCRMWESFLNI-LGELLKLSATSTQTNRRVKYIQELMSDAS-----SHC---VLTCSMACF-----------------------W-LDLVVDVEENPLPIIQKYVDIFPQ-EPQIALKFLAAKAEVTDDWEELKKLFQRTLKTFKKGDLAIWQLYLDLAAMMEFDQCQNVFEEACFSSR--KDVRYQFASKYLIWLYESKGLDDTRQLYQRLFTERMPIEFLQNCVQVESIQEKIDLKRLRHLHEKLVDYHGTENPDLWIEYIRCEKKHNGTDIESASRLFMRAKNSLKGNLNEEFLVKHA 585
            MAE++   +E  LPEL++LE+  +F+  E++   K+ +D EYK+Q++ + K+D +NY++YE+   +L+ +R  R+  + F    I  ++  R+  +F +   K+ DD+ +W  Y+ FCK+   K  L+KVF+ +L  H + P +W++AAK+E+ED+ + ++AR +  + LR + E   L+ EYF+MEL+H  K++K KE      +D++      P   E  L+ + A I+YKN++  I G  +F +  L +   FD  ++L   I  + +         ++ + ++ + +++  +  P       V + R+        E   +      MW+ ++   L    K S +     +R++    +   A      S C    L+ S+ C+                       W L L V +E     I   + + F   +PQ+ L    + AE    W E  K  + T   FKK  LA+  +  D   +      +N + +  + S   K  R  F           K L ++R      F  R  I+F       E  QE  ++  +R  +E+ +   G+ + DLW++Y++ E  H     E+  +++ RA   L+G   E F+ KHA
Sbjct:    1 MAEIIQERIEDRLPELEQLERIGLFSHAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQYEINLLELIQRRRTRIG-YSFKKDEIENSIVHRVQGVFQRASAKWKDDVQLWLSYVAFCKKWATKTRLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALRFHPECPKLYKEYFRMELMHAEKLRKEKEEFEKASMDVE-----NPDYSEEILKGELAWIIYKNSVSIIKGA-EFHVSLLSIAQLFDFAKDLQKEIYDDLQALHTDDPLTWDYVARRELEIESQTEEQPTTKQAKAVEVGRKEERCCAVYEEAVKTLPTEAMWKCYITFCLERFTKKSNSGFLRGKRLERTMTVFRKAHELKLLSECQYKQLSVSLLCYNFLREALEVAVAGTELFRDSGTMWQLKLQVLIESKSPDIAMLFEEAFVHLKPQVCLPLWISWAE----WSEGAKSQEDTEAVFKKALLAV--IGADSVTL------KNKYLDWAYRSGGYKKARAVF-----------KSLQESRPFSVDFF--RKMIQF-------EKEQESCNMANIREYYERALREFGSADSDLWMDYMKEELNHPLGRPENCGQIYWRAMKMLQGESAEAFVAKHA 590

The following BLAST results are available for this feature:

BLAST of TCONS_00065940-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00065940-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
UTP6	5.250e-50	25.44	U3 small nucleolar RNA-associated protein 6 homolo...	[more]

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TCONS_00065940-protein (polypeptide) - C. hemisphaerica