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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00065760-protein ID=TCONS_00065760-protein|Name=TCONS_00065760-protein|organism=Clytia hemisphaerica|type=polypeptide|length=884bp
MGTGASKRNISCPVCTQANLTNKDFVEHYRKAHNRKCSKCGLSGFETEES
MYRHYDQQHNKMNTGGFLCWKCAETFTDESGLMQHLKSEHNLCLNMSKLS
LRSNGEKPSCSECGKVKKNSERLQKHVEKNHRFVCQKCDSKLHFTTLKEL
LNHGEEAHGSLFQCPIKCTKKFSNVDDFLQHLLKEHNFAFVSSPNHKVDD
KHICPQCNETLKANEIFDHVTQNHIDVKPQVYKIKCPKCEDNDAEFETSD
KLIDHMREAHDFXAEFETSDKLIDHMKEAHDFASKVNLKATKTNAGNKRV
KERNQILPKVGDRVLAMWEVSMWQYFHATIKKKIEGQLRYEIDWDDGDTT
GRFVNYSNLAVDRAPIAHEIGVGSIILFSQGQYRAGQTQLTGGMRWHQGR
ITSITKQQNGGTLYSGVHTKTEADGKFSTYKGYSYEFHNLYLNDLRVGPN
VFDLLDDDEVSDGECDGVVDAGDVDVYFSCFGNDGDNAYSPKAVADELKS
KGISVIQSKDLSNELDAEARLNSMKHANLMMKKAKVFVACISDQYTQNQT
CRMEFQFAKSTLKKPVVPIVFGEGREWQLSVVGMLISGELYIEIKEKCDR
EAKIQSMLTSISSHLDLSKVSNNGDGNTVSGGVDVVDNSKPPDIFISYCW
TNSTMAFQSSQIPKAVGSEYADPRLIKKKIDGHGFTTWLDIEQLKSGDQG
VGMFEQLANALKDTKMVVAFISDEYANSVNCRMEFQFAFRTIQKPILPVV
VGTGEKWKQSVVGIMIGVNDGLEPISLQEIKSNEDFDQSLNSIMKKISDI
LDKDTIPLDQAPERKSKKPKVGDHIISHHVGHCYYTATVAEYNASTMEYT
VTWDDGDTSGRVQKYDQVRVATYIISLSFSQIMF Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0005515 | protein binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007165 | signal transduction |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007165 |
signal transduction |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 67..90
e-value: 0.21
score: 20.6
coord: 234..260
e-value: 0.8
score: 18.7
coord: 10..33
e-value: 6.7
score: 14.8
coord: 162..186
e-value: 0.64
score: 19.1
coord: 35..59
e-value: 10.0
score: 13.3
coord: 133..158
e-value: 36.0
score: 8.4
coord: 202..224
e-value: 30.0
score: 9.1
coord: 108..131
e-value: 4.8
score: 16.1 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 69..90 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 164..186 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 162..186
score: 8.725 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 67..90
score: 9.681 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 79..119
e-value: 2.4E-6
score: 27.3
coord: 146..189
e-value: 0.21
score: 11.5 |
| None | No IPR available | GENE3D | 2.30.30.140 | | coord: 308..359
e-value: 1.1E-5
score: 24.8 |
| None | No IPR available | GENE3D | 2.20.28.10 | | coord: 194..238
e-value: 0.071
score: 12.4 |
| None | No IPR available | PFAM | PF00096 | zf-C2H2 | coord: 162..186
e-value: 0.018
score: 15.4 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 47..78
e-value: 6.3E-4
score: 19.5
coord: 120..145
e-value: 0.16
score: 11.9
coord: 8..46
e-value: 0.37
score: 10.7 |
| None | No IPR available | GENE3D | 2.30.30.140 | | coord: 814..870
e-value: 1.6E-6
score: 27.2 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 239..260
e-value: 0.21
score: 11.2 |
| IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain | GENE3D | 3.40.50.10140 | | coord: 471..615
e-value: 1.0E-8
score: 34.8 |
| IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain | PFAM | PF13676 | TIR_2 | coord: 492..574
e-value: 4.0E-8
score: 33.4
coord: 676..754
e-value: 3.1E-9
score: 37.0 |
| IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain | GENE3D | 3.40.50.10140 | | coord: 639..809
e-value: 7.5E-15
score: 54.8 |
| IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain | PROSITE | PS50104 | TIR | coord: 640..740
score: 9.982 |
| IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain | SUPERFAMILY | 52200 | Toll/Interleukin receptor TIR domain | coord: 475..573 |
| IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain | SUPERFAMILY | 52200 | Toll/Interleukin receptor TIR domain | coord: 636..752 |
Blast
The following BLAST results are available for this feature:
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