TCONS_00065674-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00065674-protein
Unique Name	TCONS_00065674-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	734

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00065674-protein ID=TCONS_00065674-protein|Name=TCONS_00065674-protein|organism=Clytia hemisphaerica|type=polypeptide|length=734bp
RDTPETKCKLRRTRSGVSTRSTRRNFGSTTNLSAVEKLSEFSKLRQENSY
LRSKLRKSEQELDEVKTSNIAFKEERERLKKKTRSIQESADSLDQKSSSD
TQSSPHHGHRRSHSTHIDRSQSPVAHQRSSSVAADRSTMPAHRSNSMTSG
SPTLHKRSHSEARSSPNSSLGRLPTQSSSSVFAMVNNKGYTVSPENSLRR
QQQQQMDSSDLGSSIGDESQRNVLNQALVRNVRGKIPEELLQTLMAYTSV
DPILKHLANHFVAEIEERTKEGLINVERLESKLSHLQAQKNLIHLSLQES
KQNAENLSLLCGKYESNSTAWSLALQNTEELLETYEVMLQLQESEADIFS
RNCQAIGVVGNFDTIKSMTSTKSSQSNISIASSSSHIGFEDEDILKSYHS
KRKDLETQAKNILLQLDKKYDNASQNPSIADHDELSYKSRTSTGSSMNST
CTDTLSKDEEHRLRDYIKRLKSERNTYKATVNEKLESVNEYFDPPQNTSG
LPSTDRSEKRNFNMNLEMAVILEDMEALKEERAELKHNIYLLEKEKRALE
LKMNAKDAQEQAYIVHIEHLKSEVKDQLKKRRQMLKDAQRKGQFSVMEDE
TLSIHSGSTQTSSNQQYSSTEEIQTSDSSRRERKLKQRIQELVDTLETLS
KNSEIRHKQTNEYISDLKRANGALVTAYEKAKKRHARRLKKFEQQVVQIV
EKYQYQVKQLKEQIKVLKDTPPSTLQTPQTETSL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041149	XLOC_041149	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00065674	TCONS_00065674	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019536	USH1C-bd_PDZ_domain

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 518..562
None	No IPR available	COILS	Coil	Coil	coord: 567..591
None	No IPR available	COILS	Coil	Coil	coord: 632..652
None	No IPR available	COILS	Coil	Coil	coord: 467..487
None	No IPR available	COILS	Coil	Coil	coord: 325..345
None	No IPR available	COILS	Coil	Coil	coord: 675..720
None	No IPR available	COILS	Coil	Coil	coord: 41..96
None	No IPR available	GENE3D	1.20.1170.10		coord: 358..720 e-value: 3.0E-4 score: 19.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..217
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 424..455
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 603..634
IPR019536	Usher syndrome type-1C protein-binding protein 1, PDZ domain	PFAM	PF10506	MCC-bdg_PDZ	coord: 278..341 e-value: 5.1E-15 score: 55.1 coord: 634..699 e-value: 1.4E-11 score: 44.1

Blast

[Close]

BLAST of TCONS_00065674-protein vs. Swiss-Prot (Human)
Match: CRCM (Colorectal mutant cancer protein OS=Homo sapiens GN=MCC PE=1 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 1.644e-79
Identity = 197/491 (40.12%), Postives = 299/491 (60.90%), Query Frame = 0

Query:  238 EELLQTLMAYTSVDPILKHLANHFVAEIEERTKEGLINVERLESKLSHLQAQKNLIHLSLQESKQNAENLSLLCGKYESNSTAWSLALQNTEELLETYEVMLQLQESEADIFSRNCQAIGVVGNFDTIKSMTSTKSSQSNISIASSSSHIGFEDEDILKSYHSKRKDLETQAKNILLQLDKKYDNA--SQNPSIADHDELSYKSRTSTGSSMNSTCTDTLSKDEEHRLRDYIKRLKSERNTYKATVNEKLESVNEYFDPPQNTSGLPSTDRSEKRNFNMNLEMAVILEDMEALKEERAELKHNIYLLEKEKRALELKMNAKDAQEQAYIVHIEHLKSEVKDQLKKRRQML-------KDAQRKGQFSVMEDETLSIHSGSTQTSSNQQYSSTEEIQTSDSSRRERKLKQRIQELVDTLETLSKNSEIRHKQTNEYISDLKRANGALVTAYEKAKKRHARRLKKFEQQVVQIVEKYQYQVKQLKEQIKVLKD 719
            E L  +L   +++  I + L +H  A  E + +E  +  ERL S++ HL++Q +L+ ++L+E K NAE +S+L GKYESN+TA  LALQ +E+ +E YE++L L ESE  +     +A GV        S    +S   NI+              +LK  H  RK  E  AK +L++LD     A      S+   + LS  S TST SS  S+C    +K++E RL+DYI++LK++R   K T+ E LES+  + DP      L    +    +  ++LE AV+++++ A+KEE AELK  +YLLEKEK+ALELK++ ++AQEQAY+VHIEHLKSEV++Q ++R + L       KD   K + +      LS+    T  S N+  +     + +++ RRE+KLK R+QELV  LE L+K+SEIRH+Q+ E+++DLKRAN  LV AYEKAKK+H  +LKK E Q++ +VE+++ QV+ LK++I +L++
Sbjct:  362 EHLAHSLQDCSNIQEIFQTLYSHGSAISESKIREFEVETERLNSRIEHLKSQNDLLTITLEECKSNAERMSMLVGKYESNATALRLALQYSEQCIEAYELLLALAESEQSLILGQFRAAGV-------GSSPGDQSGDENIT-------------QMLKRAHDCRKTAENAAKALLMKLDGSCGGAFAVAGCSVQPWESLSSNSHTSTTSSTASSCDTEFTKEDEQRLKDYIQQLKNDRAAVKLTMLE-LESI--HIDP------LSYDVKPRGDSQRLDLENAVLMQELMAMKEEMAELKAQLYLLEKEKKALELKLSTREAQEQAYLVHIEHLKSEVEEQKEQRMRSLSSTSSGSKDKPGK-ECADAASPALSLAELRTTCSENELAA-----EFTNAIRREKKLKARVQELVSALERLTKSSEIRHQQSAEFVNDLKRANSNLVAAYEKAKKKHQNKLKKLESQMMAMVERHETQVRMLKQRIALLEE 817

The following BLAST results are available for this feature:

BLAST of TCONS_00065674-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00065674-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CRCM	1.644e-79	40.12	Colorectal mutant cancer protein OS=Homo sapiens G...	[more]

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TCONS_00065674-protein (polypeptide) - C. hemisphaerica