TCONS_00065606-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00065606-protein
Unique Name	TCONS_00065606-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1252

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00065606-protein ID=TCONS_00065606-protein|Name=TCONS_00065606-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1252bp
MSDQQGEEEISMDVNPLVTPIHHQDHPSPGISTEEYLSSNDGENEDGSDE
VFTALQPEPVAEKQTDFIKPESAARKGTPDDSDSESDFDYEEFNFERNEQ
ENLWYKENTQLSMLSSTGQKVPTNFYGEINAYSLTRNQPINIKYIKIAYD
TPLLELRKFLLHKWCLDLPILVVSLIGDSNLQTDAGKAGNKKFCEGMLKI
SKTPRTWFVSDTDYHLDDKFIGKANIQHIGIAHYGSWRWKGHLEGQQGRA
VDDASFDGDNHTHYLLIDDGRSHPTGVENKFRIALEEKLMSDDFGLSQVI
TLAMGGGNKALKHLSETLNKGVPALILKQTTEDVGPNLLARALEGISASK
MNDLKKSGDNDAITALFTKEMEKILGRDDLTQSSSKSKKSKKSKKKKKAK
EAHRKVSDLSEGGDDSSIEDAVNCLSRHAFIEIIYGNVNVDEAILNAFER
NAFTSTSLQDKAIIILLYVLWARGDEFRKNNVYQNLFQGEGQDGQQEEIL
PLLFLVALALNRVEFLRGFEEGIVDRAFQKFSTADLEFLYWYRTSPYCND
KIGYLASFLDLSGKTSDVVVSLEDAEAGETFCFWTCTPGKQIRLEVIEDL
LNNLWQNMAKGNKEFSNYKNHVREEMSTGLFIWAVLNGMIDMALFLITMD
NEECSKSLVAAELCQKMADTDRVPETDYQRDVYRKAASTFQHLAVGILEE
GYEQDASKTRLIAIRKLDFWTDYTCADLAINSEQVNFVANPIVNTLMDEL
WYGPLAKHINFWNFLLIFVNPLWITQLEFKNDEQLTKLSNGIGEIILFKN
WSVKRFICGAPTEKPDDKARKRKSYAVQATENPETKTRGCCDKFFYKLYL
FYFKTPIVKFFFNLFSYVVFLAILSITVLQATFNLHVTLIGWILLAYIIS
MTTAEIKQAVSTGAVGFFANLKYYLTNFWNFVDLMALLLFYIGFVLERTS
MFHNAGSVILAIDAYIFIIRLLPIFYNFKGTGPYVFMIQTMLRDMMKFLA
ILFVFALAHGVCFNAIMRPQPISISMLRDIVFQPYFNIYGELFFENDFSD
SNTVFNTPKRLGYENTIGLIMLALYMLIGNVLLLNLLIAIFGSIYEEVSN
NAKQIWAYQRYELILEYANKSIFTPPFSGLQHIFEFIKWILVSICNKCCK
RRSFNRGNSRQRTTRGTLETTPEGNIRVISHFQKILSPEVDREIDSFESD
MMQRCLRTLNASSNSNTSEGIDESLLIDISNRLKGLEEQIKLKLNKDETS
NV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041100	XLOC_041100	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00065606	TCONS_00065606	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005821	Ion_trans_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport
GO:0006811	ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005216	ion channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1226..1246
None	No IPR available	GENE3D	1.20.120.350		coord: 363..979 e-value: 1.0E-6 score: 27.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 378..416
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..88
IPR005821	Ion transport domain	PFAM	PF00520	Ion_trans	coord: 861..1101 e-value: 2.8E-12 score: 46.3

Blast

[Close]

BLAST of TCONS_00065606-protein vs. Swiss-Prot (Human)
Match: TRPM3 (Transient receptor potential cation channel subfamily M member 3 OS=Homo sapiens GN=TRPM3 PE=2 SV=4)

HSP 1 Score: 247.669 bits (631), Expect = 1.636e-66
Identity = 280/1131 (24.76%), Postives = 489/1131 (43.24%), Query Frame = 0

Query:  114 LSSTGQKVPTNFYGEINAYSLTRNQPINIKYIKIAYDTPLLELRKFLLHKWCLDLPILVVSLIGDSNLQTDAGKAGNKK-FCEGMLKISKTPRTWFVSDT----------DYHLDDKFIGKANIQHIGIAHYGSWRWKGHLEGQ--------QGRAVDDASFDGDNHTHYLLIDDGRSHPTGVENKFRIALEEKLMSDD--------FGLSQVITLAMGGGNKALKHLSETLNKGVPALILKQTTEDVGPNLLARALEGISASKMNDL---KKSGDNDAITALFTKEMEK--ILG---RDDLTQSSSKSKKSKKSKKKKKAKEAHRKVSDLSEGGDDSSIEDAVNCLSRHAFIEIIY----GNVNVDEAILNAFERNAFTSTSLQDKAIIILLYVLWARGDEFRKNNVYQNLFQGEGQDGQQEEILPLLFLVALALNRVEFLRGF-EEGIVDRAFQKFSTADLEFLYWYRTSPYCNDKIGYLASFLDLSGKTSDVVVSLEDAE-------AGETFCFWT-------------CTPGKQIRLEVIEDLLNNLWQNMAKGNKEFSNYKNHVREEMSTG-----------LFIWAVLNGMIDMALFLITMDNEECSKSLVAAELCQKMADTDRVPETDYQRDVYRKA---ASTFQHLAVGILEEGYEQDASKTRLIAIRKLDFWTDYTCADLAINSEQVNFVANPIVNTLMDELWYGPLAKHINF-WNFLLIFVNPLWITQLEFKNDEQLTKLSNGIGEIILFKNWSVKRFICGAPTEKPDDKAR----KRKSYAVQATENPETKTRGCCDKFFYKLYLFYFKTPIVKFFFNLFSYVVFLAILSITVLQATFNLHVTLIGWILLAYIISMTTAEIKQAVSTGAVGFFANLKYYLTNFWNFVDLMALLLFYIGFVLE-RTSMFHNAGSVILAIDAYIFIIRLLPIFYNFKGTGPYVFMIQTMLRDMMKFLAILFVFALAHGVCFNAIMRP-QPISISMLRDIVFQPYFNIYGELFF--------ENDFSDSNTVFNTPKRLGYENTIGLIMLALYMLIGNVLLLNLLIAIFGSIYEEVSNNAKQIWAYQRYELILEYANKSIFTPP---FSGLQHIFEFIKWILVSICNKCCKRR 1152
            +S   Q  PT+ +G I       +      Y+++++DT    L   +  +W L+LP L++S+ G   LQ    +   K+ F +G++K + T   W  +            D   D     +  I  IGIA +G    +  L G+            +   +     H+H++L D+G +   G E K R  LE+ +            F L   +  +  G   + +  S  + +GVP + L     + GPN+++  LE +  +    +     SG    I A   K  E+  ++    RD L  +  K+    ++       +A      L E            C+ +   I +      G+ ++D AIL A  + A  S   Q     + L + W R D   ++ ++  ++  +   G  E+ +    L AL L+RV+F++   E G+    F   + + LE LY  R  P  ++ + +L   +       D  +SL D          G   C +T                 K ++L  +ED +      + +G K     +  V  ++              L +WAVL     MALF      E  +K+LVA +LC+ MA      E D   D+ ++    +  F  LAV +L++ Y+QD      +   +L  W++ TC  LA+ ++  +F+A+     L+ ++W G L    N     +L  + P  I  LEFKN + +  +S    EI L +  + +        E+ D +      +    + +  +  E +++        K+Y FY   PIVKF+F   +Y+ +L + +  VL        T   WI+++YI ++   ++++ + +        +K +L  +WN  DL+A+LLF +G +L  +   F + G VI  ++   + IRLL IF   K  GPYV MI  M+ DMM F+ I+ V  ++ GV   AI+ P +  S  + ++I + PY+ IYGE+F         +N+  +   +   P        +  IM A Y+L+ N+LL+NLLIA+F + + EV + + Q+W +QRY+LI+ +  + +  PP   FS +  IF+ +          CC+ R
Sbjct:  127 ISKHTQLSPTDAFGTIEFQGGGHSN--KAMYVRVSFDTKPDLLLHLMTKEWQLELPKLLISVHG--GLQNFELQPKLKQVFGKGLIKAAMTTGAWIFTGGVNTGVIRHVGDALKDHASKSRGKICTIGIAPWGIVENQEDLIGRDVVRPYQTMSNPMSKLTVLNSMHSHFILADNGTTGKYGAEVKLRRQLEKHISLQKINTRCLPFFSLDSRLFYSFWG---SCQLDSVGIGQGVPVVAL---IVEGGPNVISIVLEYLRDTPPVPVVVCDGSGRASDILAFGHKYSEEGGLINESLRDQLLVTIQKTFTYTRT-------QAQHLFIILME------------CMKKKELITVFRMGSEGHQDIDLAILTALLKGANASAPDQ-----LSLALAWNRVD-IARSQIF--IYGQQWPVGSLEQAM----LDALVLDRVDFVKLLIENGVSMHRF--LTISRLEELYNTRHGP--SNTLYHLVRDVKKGNLPPDYRISLIDIGLVIEYLMGGAYRCNYTRKRFRTLYHNLFGPKRPKALKLLGMEDDIP-----LRRGRKTTKKREEEVDIDLDDPEINHFPFPFHELMVWAVLMKRQKMALFFWQHGEEAMAKALVACKLCKAMAH--EASENDMVDDISQELNHNSRDFGQLAVELLDQSYKQDEQLAMKLLTYELKNWSNATCLQLAVAAKHRDFIAHTCSQMLLTDMWMGRLRMRKNSGLKVILGILLPPSILSLEFKNKDDMPYMSQA-QEIHLQEKEAEEPEKPTKEKEEEDMELTAMLGRNNGESSRKKDEEEVQSKHRLIPLGRKIYEFY-NAPIVKFWFYTLAYIGYLMLFNYIVLVKMERWPSTQ-EWIVISYIFTLGIEKMREILMSEPGKLLQKVKVWLQEYWNVTDLIAILLFSVGMILRLQDQPFRSDGRVIYCVNIIYWYIRLLDIFGVNKYLGPYVMMIGKMMIDMMYFVIIMLVVLMSFGVARQAILFPNEEPSWKLAKNIFYMPYWMIYGEVFADQIDPPCGQNETREDGKIIQLPPCKTGAWIVPAIM-ACYLLVANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHERPVLPPPLIIFSHMTMIFQHL----------CCRWR 1191

The following BLAST results are available for this feature:

BLAST of TCONS_00065606-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00065606-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TRPM3	1.636e-66	24.76	Transient receptor potential cation channel subfam...	[more]

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TCONS_00065606-protein (polypeptide) - C. hemisphaerica